Analysis of interatomic Contacts of Structural Units in PDB entry:
6MK0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MK0 entry

There are 2 chains in PDB entry 6MK0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1	GLY 954
B	ILE 4	LEU 368

There are 24 helices in PDB entry 6MK0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	175	180	Right-handed alpha
Helix 2	AA2	A	188	194	Right-handed alpha
Helix 3	AA3	A	214	218	Right-handed 310
Helix 4	AA4	A	245	250	Right-handed alpha
Helix 5	AA5	A	339	342	Right-handed 310
Helix 6	AA6	A	366	370	Right-handed 310
Helix 7	AA7	B	121	123	Right-handed 310
Helix 8	AA8	B	124	131	Right-handed alpha
Helix 9	AA9	B	135	143	Right-handed alpha
Helix 10	AB1	B	169	173	Right-handed 310
Helix 11	AB2	B	199	207	Right-handed alpha
Helix 12	AB3	B	222	232	Right-handed alpha
Helix 13	AB4	B	232	237	Right-handed alpha
Helix 14	AB5	B	258	264	Right-handed 310
Helix 15	AB6	B	281	286	Right-handed 310
Helix 16	AB7	B	291	302	Right-handed alpha
Helix 17	AB8	B	314	323	Right-handed alpha
Helix 18	AB9	B	339	352	Right-handed alpha
Helix 19	AC1	B	445	449	Right-handed 310
Helix 20	AC2	B	534	538	Right-handed 310
Helix 21	AC3	B	564	568	Right-handed 310
Helix 22	AC4	B	573	577	Right-handed 310
Helix 23	AC5	B	606	620	Right-handed alpha
Helix 24	AC6	B	630	635	Right-handed alpha

There are 28 sheets in PDB entry 6MK0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	431	435	anti-parallel
Strand 3	A	421	425	anti-parallel
Strand 4	A	407	412	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	A	55	60	anti-parallel
Strand 4	A	67	69	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	81	first strand
Strand 2	A	84	85	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	104	109	anti-parallel
Strand 3	A	127	132	anti-parallel
Strand 4	A	135	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	163	first strand
Strand 2	A	168	173	anti-parallel
Strand 3	A	182	187	anti-parallel
Strand 4	A	208	209	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	229	first strand
Strand 2	A	238	243	anti-parallel
Strand 3	A	252	256	anti-parallel
Strand 4	A	263	268	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	283	first strand
Strand 2	A	292	297	anti-parallel
Strand 3	A	314	321	anti-parallel
Strand 4	A	324	332	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	303	first strand
Strand 2	A	309	311	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	346	first strand
Strand 2	A	358	362	anti-parallel
Strand 3	A	372	376	anti-parallel
Strand 4	A	389	392	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	379	first strand
Strand 2	A	382	383	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	450	first strand
Strand 2	A	472	482	anti-parallel
Strand 3	A	534	542	anti-parallel
Strand 4	A	511	513	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	450	first strand
Strand 2	A	472	482	anti-parallel
Strand 3	A	440	444	anti-parallel
Strand 4	A	577	578	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	454	first strand
Strand 2	A	585	592	parallel
Strand 3	A	555	563	anti-parallel
Strand 4	A	490	499	anti-parallel
Strand 5	A	520	528	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	461	462	first strand
Strand 2	A	469	470	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	606	610	first strand
Strand 2	A	624	633	anti-parallel
Strand 3	A	690	700	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	616	618	first strand
Strand 2	A	734	737	parallel
Strand 3	A	710	711	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	668	671	first strand
Strand 2	A	678	684	anti-parallel
Strand 3	A	641	646	anti-parallel
Strand 4	A	714	718	anti-parallel
Strand 5	A	730	731	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	742	749	first strand
Strand 2	A	775	784	anti-parallel
Strand 3	A	894	903	anti-parallel
Strand 4	A	809	817	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	752	755	first strand
Strand 2	A	942	953	parallel
Strand 3	A	918	930	anti-parallel
Strand 4	A	792	802	anti-parallel
Strand 5	A	878	886	anti-parallel
Strand 6	A	820	824	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	752	755	first strand
Strand 2	A	942	953	parallel
Strand 3	A	918	930	anti-parallel
Strand 4	A	871	872	parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	65	first strand
Strand 2	B	87	92	anti-parallel
Strand 3	B	425	431	parallel
Strand 4	B	413	418	anti-parallel
Strand 5	B	355	360	anti-parallel
Strand 6	B	385	386	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	84	first strand
Strand 2	B	97	105	anti-parallel
Strand 3	B	394	403	anti-parallel
Strand 4	B	366	373	anti-parallel
Strand 5	B	379	381	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	190	197	first strand
Strand 2	B	149	156	anti-parallel
Strand 3	B	112	119	parallel
Strand 4	B	243	250	parallel
Strand 5	B	304	311	parallel
Strand 6	B	329	333	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	516	517	first strand
Strand 2	B	523	524	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	540	543	first strand
Strand 2	B	546	549	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	553	554	first strand
Strand 2	B	560	561	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	579	582	first strand
Strand 2	B	585	588	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	638	642	first strand
Strand 2	B	677	682	parallel
Strand 3	B	664	671	anti-parallel
Strand 4	B	652	658	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MK0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MK0