Analysis of interatomic Contacts of Structural Units in PDB entry:
6MK2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MK2 entry

There is 1 chain in PDB entry 6MK2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2GLU 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 6MK2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 66Right-handed alpha
Helix 2
AA2
A
68 72Right-handed 310
Helix 3
AA3
A
101 105Right-handed 310
Helix 4
AA4
A
113 117Right-handed 310
Helix 5
AA5
A
156 170Right-handed alpha
Helix 6
AA6
A
184 189Right-handed 310
Helix 7
AA7
A
251 269Right-handed alpha
Helix 8
AA8
A
308 313Right-handed alpha
Helix 9
AA9
A
315 329Right-handed alpha
Helix 10
AB1
A
331 345Right-handed alpha
Helix 11
AB2
A
417 421Right-handed alpha
Helix 12
AB3
A
422 428Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 6MK2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 10first strand
Strand 2
A
92 98anti-parallel
Strand 3
A
132 138parallel
Strand 4
A
144 151anti-parallel
Strand 5
A
36 43anti-parallel
Strand 6
A
385 388anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 224first strand
Strand 2
A
409 416anti-parallel
Strand 3
A
396 401anti-parallel
Strand 4
A
363 365parallel
Strand 5
A
275 283parallel
Strand 6
A
299 302anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 224first strand
Strand 2
A
409 416anti-parallel
Strand 3
A
396 401anti-parallel
Strand 4
A
363 365parallel
Strand 5
A
275 283parallel
Strand 6
A
305 307anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il