Analysis of interatomic Contacts of Structural Units in PDB entry:
6MK6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MK6 entry

There are 4 chains in PDB entry 6MK6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 4	LYS 265
B	ASN 6	LYS 265
C	ASN 6	LYS 265
D	ASN 6	LYS 265

There are 48 helices in PDB entry 6MK6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	15	Right-handed alpha
Helix 2	AA2	A	44	60	Right-handed alpha
Helix 3	AA3	A	62	65	Right-handed 310
Helix 4	AA4	A	79	85	Right-handed alpha
Helix 5	AA5	A	92	102	Right-handed alpha
Helix 6	AA6	A	104	115	Right-handed alpha
Helix 7	AA7	A	117	129	Right-handed alpha
Helix 8	AA8	A	141	145	Right-handed 310
Helix 9	AA9	A	156	169	Right-handed alpha
Helix 10	AB1	A	174	187	Right-handed alpha
Helix 11	AB2	A	194	199	Right-handed 310
Helix 12	AB3	A	249	265	Right-handed alpha
Helix 13	AB4	B	7	15	Right-handed alpha
Helix 14	AB5	B	44	60	Right-handed alpha
Helix 15	AB6	B	62	65	Right-handed 310
Helix 16	AB7	B	79	85	Right-handed alpha
Helix 17	AB8	B	92	102	Right-handed alpha
Helix 18	AB9	B	104	115	Right-handed alpha
Helix 19	AC1	B	117	129	Right-handed alpha
Helix 20	AC2	B	141	145	Right-handed 310
Helix 21	AC3	B	156	169	Right-handed alpha
Helix 22	AC4	B	174	187	Right-handed alpha
Helix 23	AC5	B	194	199	Right-handed 310
Helix 24	AC6	B	249	265	Right-handed alpha
Helix 25	AC7	C	7	15	Right-handed alpha
Helix 26	AC8	C	44	60	Right-handed alpha
Helix 27	AC9	C	62	65	Right-handed 310
Helix 28	AD1	C	79	86	Right-handed alpha
Helix 29	AD2	C	92	103	Right-handed alpha
Helix 30	AD3	C	104	115	Right-handed alpha
Helix 31	AD4	C	117	129	Right-handed alpha
Helix 32	AD5	C	141	145	Right-handed 310
Helix 33	AD6	C	156	169	Right-handed alpha
Helix 34	AD7	C	174	187	Right-handed alpha
Helix 35	AD8	C	194	199	Right-handed 310
Helix 36	AD9	C	249	265	Right-handed alpha
Helix 37	AE1	D	7	15	Right-handed alpha
Helix 38	AE2	D	44	60	Right-handed alpha
Helix 39	AE3	D	62	65	Right-handed 310
Helix 40	AE4	D	79	85	Right-handed alpha
Helix 41	AE5	D	92	102	Right-handed alpha
Helix 42	AE6	D	104	115	Right-handed alpha
Helix 43	AE7	D	117	129	Right-handed alpha
Helix 44	AE8	D	141	145	Right-handed 310
Helix 45	AE9	D	156	169	Right-handed alpha
Helix 46	AF1	D	174	187	Right-handed alpha
Helix 47	AF2	D	194	199	Right-handed 310
Helix 48	AF3	D	249	265	Right-handed alpha

There are 12 sheets in PDB entry 6MK6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	33	first strand
Strand 2	A	16	24	anti-parallel
Strand 3	A	233	241	anti-parallel
Strand 4	A	218	225	anti-parallel
Strand 5	A	204	211	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	40	first strand
Strand 2	A	154	155	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	68	first strand
Strand 2	A	90	91	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	33	first strand
Strand 2	B	17	24	anti-parallel
Strand 3	B	233	240	anti-parallel
Strand 4	B	218	225	anti-parallel
Strand 5	B	204	211	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	40	first strand
Strand 2	B	154	155	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	68	first strand
Strand 2	B	90	91	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	33	first strand
Strand 2	C	17	24	anti-parallel
Strand 3	C	233	240	anti-parallel
Strand 4	C	218	225	anti-parallel
Strand 5	C	204	211	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	154	155	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	68	first strand
Strand 2	C	90	91	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	33	first strand
Strand 2	D	16	24	anti-parallel
Strand 3	D	233	241	anti-parallel
Strand 4	D	218	225	anti-parallel
Strand 5	D	204	211	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	40	first strand
Strand 2	D	154	155	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	68	first strand
Strand 2	D	90	91	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MK6

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MK6