Analysis of interatomic Contacts of Structural Units in PDB entry:
6MKI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MKI entry

There is 1 chain in PDB entry 6MKI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 172LYS 680
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6MKI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
269 272Right-handed 310
Helix 2
AA2
A
273 278Right-handed alpha
Helix 3
AA3
A
284 289Right-handed alpha
Helix 4
AA4
A
303 309Right-handed alpha
Helix 5
AA5
A
309 315Right-handed alpha
Helix 6
AA6
A
350 360Right-handed alpha
Helix 7
AA7
A
388 394Right-handed alpha
Helix 8
AA8
A
397 406Right-handed alpha
Helix 9
AA9
A
414 418Right-handed 310
Helix 10
AB1
A
422 425Right-handed 310
Helix 11
AB2
A
426 438Right-handed alpha
Helix 12
AB3
A
456 460Right-handed 310
Helix 13
AB4
A
474 482Right-handed alpha
Helix 14
AB5
A
483 504Right-handed alpha
Helix 15
AB6
A
532 540Right-handed alpha
Helix 16
AB7
A
548 556Right-handed alpha
Helix 17
AB8
A
557 561Right-handed 310
Helix 18
AB9
A
584 595Right-handed alpha
Helix 19
AC1
A
596 601Right-handed alpha
Helix 20
AC2
A
606 610Right-handed 310
Helix 21
AC3
A
657 662Right-handed alpha
Helix 22
AC4
A
663 668Right-handed alpha
Helix 23
AC5
A
668 679Right-handed alpha
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There are 5 sheets in PDB entry 6MKI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 266first strand
Strand 2
A
185 194anti-parallel
Strand 3
A
178 179anti-parallel
Strand 4
A
345 346parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 282first strand
Strand 2
A
299 301anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 384first strand
Strand 2
A
366 371anti-parallel
Strand 3
A
650 655anti-parallel
Strand 4
A
636 643anti-parallel
Strand 5
A
616 623anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 447first strand
Strand 2
A
472 473anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
565 566first strand
Strand 2
A
578 579anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il