Analysis of interatomic Contacts of Structural Units in PDB entry:
6MKY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MKY entry

There are 2 chains in PDB entry 6MKY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 100VAL 358
B
 VAL 100ARG 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 6MKY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
310 320Right-handed 310
Helix 2
AA2
A
331 336Right-handed 310
Helix 3
AA3
A
338 347Right-handed alpha
Helix 4
AA4
B
310 320Right-handed 310
Helix 5
AA5
B
331 336Right-handed 310
Helix 6
AA6
B
338 347Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6MKY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 104first strand
Strand 2
A
124 126parallel
Strand 3
A
146 148parallel
Strand 4
A
168 170parallel
Strand 5
A
190 192parallel
Strand 6
A
212 214parallel
Strand 7
A
234 236parallel
Strand 8
A
256 258parallel
Strand 9
A
278 280parallel
Strand 10
A
300 302parallel
Strand 11
A
325 327parallel
Strand 12
A
352 353parallel
Strand 13
A
356 357anti-parallel
Back to list of sheets
Back to top of page

There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 104first strand
Strand 2
B
124 126parallel
Strand 3
B
146 148parallel
Strand 4
B
168 170parallel
Strand 5
B
190 192parallel
Strand 6
B
212 214parallel
Strand 7
B
234 236parallel
Strand 8
B
256 258parallel
Strand 9
B
278 280parallel
Strand 10
B
300 302parallel
Strand 11
B
325 327parallel
Strand 12
B
352 353parallel
Strand 13
B
356 357anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il