Analysis of interatomic Contacts of Structural Units in PDB entry:
6ML1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ML1 entry

There are 5 chains in PDB entry 6ML1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 283	GLN 933
B	ASN 283	GLY 937
E	ALA -1	LEU 84
C	ALA -1	TYR 85
G	MET 11	HIS 15

There are 28 helices in PDB entry 6ML1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	300	309	Right-handed alpha
Helix 2	AA2	A	310	319	Right-handed alpha
Helix 3	AA3	A	322	326	Right-handed 310
Helix 4	AA4	A	336	350	Right-handed alpha
Helix 5	AA5	A	359	370	Right-handed alpha
Helix 6	AA6	A	383	396	Right-handed alpha
Helix 7	AA7	A	414	430	Right-handed alpha
Helix 8	AA8	A	432	439	Right-handed alpha
Helix 9	AA9	A	788	796	Right-handed alpha
Helix 10	AB1	A	840	844	Right-handed 310
Helix 11	AB2	A	916	920	Right-handed 310
Helix 12	AB3	B	300	309	Right-handed alpha
Helix 13	AB4	B	310	319	Right-handed alpha
Helix 14	AB5	B	322	326	Right-handed 310
Helix 15	AB6	B	336	350	Right-handed alpha
Helix 16	AB7	B	359	370	Right-handed alpha
Helix 17	AB8	B	382	396	Right-handed alpha
Helix 18	AB9	B	414	430	Right-handed alpha
Helix 19	AC1	B	432	439	Right-handed alpha
Helix 20	AC2	B	788	796	Right-handed alpha
Helix 21	AC3	B	841	845	Right-handed 310
Helix 22	AC4	B	916	920	Right-handed 310
Helix 23	AC5	E	22	35	Right-handed alpha
Helix 24	AC6	E	37	39	Right-handed 310
Helix 25	AC7	E	63	67	Right-handed 310
Helix 26	AC8	C	22	35	Right-handed alpha
Helix 27	AC9	C	37	39	Right-handed 310
Helix 28	AD1	C	62	67	Right-handed 310

There are 15 sheets in PDB entry 6ML1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	291	first strand
Strand 2	A	356	357	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	454	461	first strand
Strand 2	A	440	447	anti-parallel
Strand 3	A	819	826	anti-parallel
Strand 4	A	799	800	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	466	first strand
Strand 2	A	830	835	parallel
Strand 3	A	925	932	anti-parallel
Strand 4	A	873	884	anti-parallel
Strand 5	A	859	861	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	466	first strand
Strand 2	A	830	835	parallel
Strand 3	A	925	932	anti-parallel
Strand 4	A	873	884	anti-parallel
Strand 5	A	891	897	anti-parallel
Strand 6	A	904	908	anti-parallel
Strand 7	A	911	914	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	785	787	first strand
Strand 2	A	851	853	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	807	809	first strand
Strand 2	A	814	816	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	291	first strand
Strand 2	B	356	357	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	461	first strand
Strand 2	B	440	447	anti-parallel
Strand 3	B	819	826	anti-parallel
Strand 4	B	799	800	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	467	first strand
Strand 2	B	830	836	parallel
Strand 3	B	925	932	anti-parallel
Strand 4	B	873	884	anti-parallel
Strand 5	B	859	861	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	467	first strand
Strand 2	B	830	836	parallel
Strand 3	B	925	932	anti-parallel
Strand 4	B	873	884	anti-parallel
Strand 5	B	891	897	anti-parallel
Strand 6	B	904	908	anti-parallel
Strand 7	B	911	914	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	785	787	first strand
Strand 2	B	851	853	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	807	809	first strand
Strand 2	B	814	816	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	17	first strand
Strand 2	E	1	6	anti-parallel
Strand 3	E	73	78	parallel
Strand 4	E	41	45	anti-parallel
Strand 5	E	55	56	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	17	first strand
Strand 2	C	1	6	anti-parallel
Strand 3	C	73	80	parallel
Strand 4	C	41	45	anti-parallel
Strand 5	C	55	56	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	17	first strand
Strand 2	C	1	6	anti-parallel
Strand 3	C	73	80	parallel
Strand 4	C	83	85	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ML1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ML1