Analysis of interatomic Contacts of Structural Units in PDB entry:
6MLC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MLC entry

There are 6 chains in PDB entry 6MLC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1054	PRO 1138
B	SER 1054	PRO 1138
C	SER 1054	PRO 1138
D	SER 1054	ARG 1137
E	GLY 1514	ARG 1519
F	GLY 1514	ARG 1519

There are 13 helices in PDB entry 6MLC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1078	1083	Right-handed alpha
Helix 2	AA2	A	1113	1116	Right-handed 310
Helix 3	AA3	A	1119	1130	Right-handed alpha
Helix 4	AA4	B	1078	1083	Right-handed alpha
Helix 5	AA5	B	1113	1116	Right-handed 310
Helix 6	AA6	B	1119	1128	Right-handed alpha
Helix 7	AA7	B	1133	1137	Right-handed 310
Helix 8	AA8	C	1078	1083	Right-handed alpha
Helix 9	AA9	C	1113	1116	Right-handed 310
Helix 10	AB1	C	1119	1130	Right-handed alpha
Helix 11	AB2	D	1078	1083	Right-handed alpha
Helix 12	AB3	D	1113	1116	Right-handed 310
Helix 13	AB4	D	1119	1128	Right-handed alpha

There are 8 sheets in PDB entry 6MLC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1055	1056	first strand
Strand 2	A	1063	1064	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1109	1111	first strand
Strand 2	A	1099	1102	anti-parallel
Strand 3	E	1515	1517	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1055	1056	first strand
Strand 2	B	1063	1064	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1100	1102	first strand
Strand 2	B	1109	1111	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1055	1056	first strand
Strand 2	C	1063	1064	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1109	1111	first strand
Strand 2	C	1099	1102	anti-parallel
Strand 3	F	1515	1517	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1055	1056	first strand
Strand 2	D	1063	1064	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1100	1102	first strand
Strand 2	D	1109	1111	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MLC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MLC