Analysis of interatomic Contacts of Structural Units in PDB entry:
6MLJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MLJ entry

There are 2 chains in PDB entry 6MLJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2ASP 238
B
 LEU 2ASP 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6MLJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 42Right-handed alpha
Helix 2
AA2
A
51 53Right-handed 310
Helix 3
AA3
A
54 61Right-handed alpha
Helix 4
AA4
A
74 79Right-handed alpha
Helix 5
AA5
A
105 110Right-handed alpha
Helix 6
AA6
A
120 130Right-handed alpha
Helix 7
AA7
A
142 152Right-handed alpha
Helix 8
AA8
A
162 169Right-handed alpha
Helix 9
AA9
A
172 176Right-handed 310
Helix 10
AB1
A
187 192Right-handed alpha
Helix 11
AB2
A
203 220Right-handed alpha
Helix 12
AB3
A
221 229Right-handed alpha
Helix 13
AB4
B
28 41Right-handed alpha
Helix 14
AB5
B
51 53Right-handed 310
Helix 15
AB6
B
54 61Right-handed alpha
Helix 16
AB7
B
74 79Right-handed alpha
Helix 17
AB8
B
105 110Right-handed alpha
Helix 18
AB9
B
120 130Right-handed alpha
Helix 19
AC1
B
142 152Right-handed alpha
Helix 20
AC2
B
162 169Right-handed alpha
Helix 21
AC3
B
172 176Right-handed 310
Helix 22
AC4
B
187 192Right-handed alpha
Helix 23
AC5
B
203 220Right-handed alpha
Helix 24
AC6
B
221 231Right-handed alpha
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There are 8 sheets in PDB entry 6MLJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 49first strand
Strand 2
A
5 10parallel
Strand 3
A
66 67parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
18 20anti-parallel
Strand 3
A
26 27anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
A
198 199anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 140first strand
Strand 2
A
113 117parallel
Strand 3
A
157 161parallel
Strand 4
A
92 97anti-parallel
Strand 5
A
178 180anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 49first strand
Strand 2
B
5 10parallel
Strand 3
B
66 67parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 20first strand
Strand 2
B
26 27anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 83first strand
Strand 2
B
198 199anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 140first strand
Strand 2
B
113 117parallel
Strand 3
B
157 161parallel
Strand 4
B
92 97anti-parallel
Strand 5
B
178 180anti-parallel
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