Analysis of interatomic Contacts of Structural Units in PDB entry:
6MLK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MLK entry

There are 3 chains in PDB entry 6MLK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 16GLY 279
L
 LEU 16ARG 232
H
 VAL 4PRO 222
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6MLK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 28Right-handed alpha
Helix 2
AA2
A
30 43Right-handed alpha
Helix 3
AA3
A
81 84Right-handed 310
Helix 4
AA4
A
85 93Right-handed alpha
Helix 5
AA5
A
115 129Right-handed alpha
Helix 6
AA6
A
142 159Right-handed alpha
Helix 7
AA7
A
176 182Right-handed alpha
Helix 8
AA8
A
182 193Right-handed alpha
Helix 9
AA9
A
199 216Right-handed alpha
Helix 10
AB1
A
239 243Right-handed 310
Helix 11
AB2
A
260 264Right-handed 310
Helix 12
AB3
A
266 279Right-handed alpha
Helix 13
AB4
L
100 104Right-handed 310
Helix 14
AB5
L
142 147Right-handed alpha
Helix 15
AB6
L
204 208Right-handed alpha
Helix 16
AB7
H
75 77Right-handed 310
Helix 17
AB8
H
88 92Right-handed 310
Helix 18
AB9
H
165 167Right-handed 310
Helix 19
AC1
H
194 199Right-handed 310
Helix 20
AC2
H
210 213Right-handed 310
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There are 12 sheets in PDB entry 6MLK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
112 113parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
98 101anti-parallel
Strand 3
A
69 73parallel
Strand 4
A
136 141parallel
Strand 5
A
165 168parallel
Strand 6
A
225 230parallel
Strand 7
A
251 255parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
20 23first strand
Strand 2
L
35 41anti-parallel
Strand 3
L
91 96anti-parallel
Strand 4
L
83 88anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
26 29first strand
Strand 2
L
123 127parallel
Strand 3
L
105 111anti-parallel
Strand 4
L
54 59anti-parallel
Strand 5
L
66 70anti-parallel
Strand 6
L
74 75anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
26 29first strand
Strand 2
L
123 127parallel
Strand 3
L
105 111anti-parallel
Strand 4
L
118 119anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
135 139first strand
Strand 2
L
150 160anti-parallel
Strand 3
L
194 203anti-parallel
Strand 4
L
180 184anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
174 175first strand
Strand 2
L
165 171anti-parallel
Strand 3
L
212 219anti-parallel
Strand 4
L
226 231anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
5 10first strand
Strand 2
H
20 27anti-parallel
Strand 3
H
79 84anti-parallel
Strand 4
H
69 74anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
13 14first strand
Strand 2
H
116 120parallel
Strand 3
H
93 99anti-parallel
Strand 4
H
36 41anti-parallel
Strand 5
H
48 53anti-parallel
Strand 6
H
59 61anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
129 133first strand
Strand 2
H
145 154anti-parallel
Strand 3
H
185 193anti-parallel
Strand 4
H
172 174anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
129 133first strand
Strand 2
H
145 154anti-parallel
Strand 3
H
185 193anti-parallel
Strand 4
H
178 179anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
160 163first strand
Strand 2
H
203 209anti-parallel
Strand 3
H
214 220anti-parallel
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