Analysis of interatomic Contacts of Structural Units in PDB entry:
6MLM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MLM entry

There are 12 chains in PDB entry 6MLM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 26	PRO 343
C	ALA 7	ASP 174
E	VAL 2	SER 112
I	GLU 1	ILE 106
B	GLY 26	PRO 343
D	ALA 7	ASP 174
F	VAL 2	SER 112
G	GLU 1	ILE 106
H	GLY 26	PRO 343
J	ALA 7	ASP 174
K	VAL 2	SER 112
L	GLU 1	ILE 106

There are 39 helices in PDB entry 6MLM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	82	87	Right-handed 310
Helix 2	AA2	A	89	96	Right-handed 310
Helix 3	AA3	A	120	130	Right-handed alpha
Helix 4	AA4	A	155	160	Right-handed 310
Helix 5	AA5	A	203	212	Right-handed alpha
Helix 6	AA6	C	37	49	Right-handed alpha
Helix 7	AA7	C	50	57	Right-handed alpha
Helix 8	AA8	C	74	127	Right-handed alpha
Helix 9	AA9	C	145	154	Right-handed alpha
Helix 10	AB1	C	158	171	Right-handed alpha
Helix 11	AB2	E	63	65	Right-handed 310
Helix 12	AB3	E	83	87	Right-handed 310
Helix 13	AB4	I	79	83	Right-handed 310
Helix 14	AB5	B	82	87	Right-handed 310
Helix 15	AB6	B	89	96	Right-handed 310
Helix 16	AB7	B	120	130	Right-handed alpha
Helix 17	AB8	B	155	160	Right-handed 310
Helix 18	AB9	B	203	212	Right-handed alpha
Helix 19	AC1	D	37	49	Right-handed alpha
Helix 20	AC2	D	50	57	Right-handed alpha
Helix 21	AC3	D	74	127	Right-handed alpha
Helix 22	AC4	D	145	154	Right-handed alpha
Helix 23	AC5	D	158	171	Right-handed alpha
Helix 24	AC6	F	63	65	Right-handed 310
Helix 25	AC7	F	83	87	Right-handed 310
Helix 26	AC8	G	79	83	Right-handed 310
Helix 27	AC9	H	82	87	Right-handed 310
Helix 28	AD1	H	89	96	Right-handed 310
Helix 29	AD2	H	120	130	Right-handed alpha
Helix 30	AD3	H	155	160	Right-handed 310
Helix 31	AD4	H	203	212	Right-handed alpha
Helix 32	AD5	J	37	49	Right-handed alpha
Helix 33	AD6	J	50	57	Right-handed alpha
Helix 34	AD7	J	74	127	Right-handed alpha
Helix 35	AD8	J	145	154	Right-handed alpha
Helix 36	AD9	J	158	171	Right-handed alpha
Helix 37	AE1	K	63	65	Right-handed 310
Helix 38	AE2	K	83	87	Right-handed 310
Helix 39	AE3	L	79	83	Right-handed 310

There are 54 sheets in PDB entry 6MLM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	27	first strand
Strand 2	A	27	31	anti-parallel
Strand 3	C	137	140	anti-parallel
Strand 4	C	130	132	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	43	first strand
Strand 2	A	48	52	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	57	first strand
Strand 2	A	331	333	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	310	311	parallel
Strand 3	A	323	324	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	68	first strand
Strand 2	A	290	291	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	103	105	parallel
Strand 3	A	283	285	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	133	138	anti-parallel
Strand 3	A	270	274	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	118	first strand
Strand 2	A	245	253	parallel
Strand 3	A	192	200	anti-parallel
Strand 4	A	267	270	anti-parallel
Strand 5	A	167	168	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	185	first strand
Strand 2	A	258	263	anti-parallel
Strand 3	A	218	222	anti-parallel
Strand 4	A	225	229	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	299	first strand
Strand 2	A	302	304	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	321	first strand
Strand 2	C	61	63	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	22	25	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	107	111	parallel
Strand 3	E	88	95	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	57	59	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	107	111	parallel
Strand 3	E	88	95	anti-parallel
Strand 4	E	100	103	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	20	first strand
Strand 2	E	80	82	anti-parallel
Strand 3	E	67	69	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	7	first strand
Strand 2	I	19	25	anti-parallel
Strand 3	I	70	75	anti-parallel
Strand 4	I	62	67	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	102	105	parallel
Strand 3	I	85	90	anti-parallel
Strand 4	I	33	38	anti-parallel
Strand 5	I	45	49	anti-parallel
Strand 6	I	53	54	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	102	105	parallel
Strand 3	I	85	90	anti-parallel
Strand 4	I	97	98	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	27	first strand
Strand 2	B	27	31	anti-parallel
Strand 3	D	137	140	anti-parallel
Strand 4	D	130	132	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	43	first strand
Strand 2	B	48	52	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	57	first strand
Strand 2	B	331	333	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	60	first strand
Strand 2	B	310	311	parallel
Strand 3	B	323	324	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	68	first strand
Strand 2	B	290	291	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	76	first strand
Strand 2	B	103	105	parallel
Strand 3	B	283	285	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	133	138	anti-parallel
Strand 3	B	270	274	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	245	253	parallel
Strand 3	B	192	200	anti-parallel
Strand 4	B	267	270	anti-parallel
Strand 5	B	167	168	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	185	first strand
Strand 2	B	258	263	anti-parallel
Strand 3	B	218	222	anti-parallel
Strand 4	B	225	229	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	299	first strand
Strand 2	B	302	304	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	321	first strand
Strand 2	D	61	63	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	6	first strand
Strand 2	F	22	25	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	107	111	parallel
Strand 3	F	88	95	anti-parallel
Strand 4	F	33	39	anti-parallel
Strand 5	F	45	51	anti-parallel
Strand 6	F	57	59	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	107	111	parallel
Strand 3	F	88	95	anti-parallel
Strand 4	F	100	103	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	20	first strand
Strand 2	F	80	82	anti-parallel
Strand 3	F	67	69	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	70	75	anti-parallel
Strand 4	G	62	67	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	102	105	parallel
Strand 3	G	85	90	anti-parallel
Strand 4	G	33	38	anti-parallel
Strand 5	G	45	49	anti-parallel
Strand 6	G	53	54	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	102	105	parallel
Strand 3	G	85	90	anti-parallel
Strand 4	G	97	98	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	24	27	first strand
Strand 2	H	27	31	anti-parallel
Strand 3	J	137	140	anti-parallel
Strand 4	J	130	132	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	40	43	first strand
Strand 2	H	48	52	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	55	57	first strand
Strand 2	H	331	333	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	60	first strand
Strand 2	H	310	311	parallel
Strand 3	H	323	324	parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	67	68	first strand
Strand 2	H	290	291	parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	75	76	first strand
Strand 2	H	103	105	parallel
Strand 3	H	283	285	parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	98	99	first strand
Strand 2	H	133	138	anti-parallel
Strand 3	H	270	274	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	116	118	first strand
Strand 2	H	245	253	parallel
Strand 3	H	192	200	anti-parallel
Strand 4	H	267	270	anti-parallel
Strand 5	H	167	168	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	180	185	first strand
Strand 2	H	258	263	anti-parallel
Strand 3	H	218	222	anti-parallel
Strand 4	H	225	229	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	297	299	first strand
Strand 2	H	302	304	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	319	321	first strand
Strand 2	J	61	63	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	6	first strand
Strand 2	K	22	25	anti-parallel

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There are 6 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	107	111	parallel
Strand 3	K	88	95	anti-parallel
Strand 4	K	33	39	anti-parallel
Strand 5	K	45	51	anti-parallel
Strand 6	K	57	59	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	107	111	parallel
Strand 3	K	88	95	anti-parallel
Strand 4	K	100	103	anti-parallel

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There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	18	20	first strand
Strand 2	K	80	82	anti-parallel
Strand 3	K	67	69	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	102	105	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	102	105	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MLM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MLM