Analysis of interatomic Contacts of Structural Units in PDB entry:
6MLX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MLX entry

There are 4 chains in PDB entry 6MLX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 36	ALA 247
B	LYS 36	ALA 248
C	LYS 36	ALA 249
D	LYS 36	ALA 248

There are 8 helices in PDB entry 6MLX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	41	Right-handed 310
Helix 2	AA2	A	230	240	Right-handed alpha
Helix 3	AA3	B	39	41	Right-handed 310
Helix 4	AA4	B	230	241	Right-handed alpha
Helix 5	AA5	C	39	41	Right-handed 310
Helix 6	AA6	C	230	241	Right-handed alpha
Helix 7	AA7	D	39	41	Right-handed 310
Helix 8	AA8	D	230	240	Right-handed alpha

There are 20 sheets in PDB entry 6MLX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	47	first strand
Strand 2	A	54	59	anti-parallel
Strand 3	A	75	80	parallel
Strand 4	A	71	72	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	47	first strand
Strand 2	A	54	59	anti-parallel
Strand 3	A	75	80	parallel
Strand 4	A	102	103	parallel
Strand 5	A	125	126	parallel
Strand 6	A	148	149	parallel
Strand 7	A	171	172	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	67	first strand
Strand 2	A	93	95	parallel
Strand 3	A	116	118	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	164	first strand
Strand 2	A	185	187	parallel
Strand 3	A	208	210	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	195	first strand
Strand 2	A	217	218	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	47	first strand
Strand 2	B	54	59	anti-parallel
Strand 3	B	75	80	parallel
Strand 4	B	71	72	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	47	first strand
Strand 2	B	54	59	anti-parallel
Strand 3	B	75	80	parallel
Strand 4	B	102	103	parallel
Strand 5	B	125	126	parallel
Strand 6	B	148	149	parallel
Strand 7	B	171	172	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	67	first strand
Strand 2	B	93	95	parallel
Strand 3	B	116	118	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	164	first strand
Strand 2	B	185	187	parallel
Strand 3	B	208	210	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	195	first strand
Strand 2	B	217	218	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	47	first strand
Strand 2	C	54	59	anti-parallel
Strand 3	C	75	80	parallel
Strand 4	C	71	72	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	47	first strand
Strand 2	C	54	59	anti-parallel
Strand 3	C	75	80	parallel
Strand 4	C	102	103	parallel
Strand 5	C	125	126	parallel
Strand 6	C	148	149	parallel
Strand 7	C	171	172	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	67	first strand
Strand 2	C	93	95	parallel
Strand 3	C	116	118	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	164	first strand
Strand 2	C	185	187	parallel
Strand 3	C	208	210	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	195	first strand
Strand 2	C	217	218	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	47	first strand
Strand 2	D	54	59	anti-parallel
Strand 3	D	75	80	parallel
Strand 4	D	71	72	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	47	first strand
Strand 2	D	54	59	anti-parallel
Strand 3	D	75	80	parallel
Strand 4	D	102	103	parallel
Strand 5	D	125	126	parallel
Strand 6	D	148	149	parallel
Strand 7	D	171	172	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	67	first strand
Strand 2	D	93	95	parallel
Strand 3	D	116	118	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	164	first strand
Strand 2	D	185	187	parallel
Strand 3	D	208	210	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	195	first strand
Strand 2	D	217	218	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MLX

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MLX