Analysis of interatomic Contacts of Structural Units in PDB entry:
6MLY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MLY entry

There are 2 chains in PDB entry 6MLY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 27	GLY 796
B	LYS 25	LYS 583

There are 64 helices in PDB entry 6MLY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	85	90	Right-handed alpha
Helix 2	AA2	A	457	460	Right-handed 310
Helix 3	AA3	A	535	537	Right-handed 310
Helix 4	AA4	A	568	576	Right-handed alpha
Helix 5	AA5	A	576	584	Right-handed alpha
Helix 6	AA6	A	601	617	Right-handed alpha
Helix 7	AA7	A	634	646	Right-handed alpha
Helix 8	AA8	A	686	690	Right-handed 310
Helix 9	AA9	A	701	708	Right-handed alpha
Helix 10	AB1	A	710	713	Right-handed 310
Helix 11	AB2	A	714	721	Right-handed alpha
Helix 12	AB3	A	722	727	Right-handed 310
Helix 13	AB4	A	746	759	Right-handed alpha
Helix 14	AB5	A	780	796	Right-handed alpha
Helix 15	AB6	B	85	90	Right-handed alpha
Helix 16	AB7	B	194	198	Right-handed 310
Helix 17	AB8	B	277	279	Right-handed 310
Helix 18	AB9	B	299	302	Right-handed 310
Helix 19	AC1	B	368	372	Right-handed 310
Helix 20	AC2	B	457	460	Right-handed 310
Helix 21	AC3	B	535	537	Right-handed 310
Helix 22	AC4	B	568	584	Right-handed alpha
Helix 23	AC5	B	601	617	Right-handed alpha
Helix 24	AC6	B	618	621	Right-handed 310
Helix 25	AC7	B	634	646	Right-handed alpha
Helix 26	AC8	B	686	690	Right-handed 310
Helix 27	AC9	B	701	708	Right-handed alpha
Helix 28	AD1	B	710	713	Right-handed 310
Helix 29	AD2	B	714	721	Right-handed alpha
Helix 30	AD3	B	722	727	Right-handed 310
Helix 31	AD4	B	747	759	Right-handed alpha
Helix 32	AD5	B	780	796	Right-handed alpha
Helix 33	AD6	C	194	198	Right-handed 310
Helix 34	AD7	C	277	279	Right-handed 310
Helix 35	AD8	C	299	302	Right-handed 310
Helix 36	AD9	C	345	347	Right-handed 310
Helix 37	AE1	C	457	460	Right-handed 310
Helix 38	AE2	C	535	537	Right-handed 310
Helix 39	AE3	C	568	583	Right-handed alpha
Helix 40	AE4	C	601	617	Right-handed alpha
Helix 41	AE5	C	634	646	Right-handed alpha
Helix 42	AE6	C	686	690	Right-handed 310
Helix 43	AE7	C	701	708	Right-handed alpha
Helix 44	AE8	C	714	721	Right-handed alpha
Helix 45	AE9	C	722	727	Right-handed 310
Helix 46	AF1	C	747	759	Right-handed alpha
Helix 47	AF2	C	780	795	Right-handed alpha
Helix 48	AF3	D	85	90	Right-handed alpha
Helix 49	AF4	D	194	198	Right-handed 310
Helix 50	AF5	D	277	279	Right-handed 310
Helix 51	AF6	D	299	302	Right-handed 310
Helix 52	AF7	D	345	347	Right-handed 310
Helix 53	AF8	D	368	372	Right-handed 310
Helix 54	AF9	D	457	460	Right-handed 310
Helix 55	AG1	D	535	537	Right-handed 310
Helix 56	AG2	D	568	584	Right-handed alpha
Helix 57	AG3	D	601	617	Right-handed alpha
Helix 58	AG4	D	634	646	Right-handed alpha
Helix 59	AG5	D	686	690	Right-handed 310
Helix 60	AG6	D	701	707	Right-handed alpha
Helix 61	AG7	D	714	721	Right-handed alpha
Helix 62	AG8	D	722	727	Right-handed 310
Helix 63	AG9	D	747	760	Right-handed alpha
Helix 64	AH1	D	780	796	Right-handed alpha

There are 40 sheets in PDB entry 6MLY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	44	first strand
Strand 2	A	47	51	anti-parallel
Strand 3	A	60	66	anti-parallel
Strand 4	A	72	79	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	58	first strand
Strand 2	A	339	341	anti-parallel
Strand 3	A	376	379	anti-parallel
Strand 4	A	494	497	anti-parallel
Strand 5	A	401	407	anti-parallel
Strand 6	A	412	417	anti-parallel
Strand 7	A	424	429	anti-parallel
Strand 8	A	436	442	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	109	first strand
Strand 2	A	112	119	anti-parallel
Strand 3	A	124	130	anti-parallel
Strand 4	A	139	143	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	154	first strand
Strand 2	A	160	164	anti-parallel
Strand 3	A	170	173	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	213	first strand
Strand 2	A	216	220	anti-parallel
Strand 3	A	235	237	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	262	first strand
Strand 2	A	268	275	anti-parallel
Strand 3	A	281	288	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	350	first strand
Strand 2	A	358	361	anti-parallel
Strand 3	A	508	517	anti-parallel
Strand 4	A	384	392	anti-parallel
Strand 5	A	447	455	anti-parallel
Strand 6	A	462	468	anti-parallel
Strand 7	A	475	476	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	350	first strand
Strand 2	A	358	361	anti-parallel
Strand 3	A	508	517	anti-parallel
Strand 4	A	384	392	anti-parallel
Strand 5	A	447	455	anti-parallel
Strand 6	A	462	468	anti-parallel
Strand 7	A	481	482	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	524	529	first strand
Strand 2	A	539	543	anti-parallel
Strand 3	A	585	590	anti-parallel
Strand 4	A	552	558	parallel
Strand 5	A	623	633	parallel
Strand 6	A	677	681	parallel
Strand 7	A	733	739	parallel
Strand 8	A	763	769	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	651	654	first strand
Strand 2	A	657	660	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	44	first strand
Strand 2	B	47	51	anti-parallel
Strand 3	B	60	66	anti-parallel
Strand 4	B	72	79	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	58	first strand
Strand 2	B	339	341	anti-parallel
Strand 3	B	376	379	anti-parallel
Strand 4	B	494	501	anti-parallel
Strand 5	B	400	407	anti-parallel
Strand 6	B	412	418	anti-parallel
Strand 7	B	423	429	anti-parallel
Strand 8	B	436	443	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	109	first strand
Strand 2	B	112	119	anti-parallel
Strand 3	B	124	130	anti-parallel
Strand 4	B	139	143	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	154	first strand
Strand 2	B	160	165	anti-parallel
Strand 3	B	169	174	anti-parallel
Strand 4	B	187	190	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	213	first strand
Strand 2	B	216	225	anti-parallel
Strand 3	B	231	237	anti-parallel
Strand 4	B	245	250	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	262	first strand
Strand 2	B	268	275	anti-parallel
Strand 3	B	281	290	anti-parallel
Strand 4	B	295	297	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	350	first strand
Strand 2	B	358	361	anti-parallel
Strand 3	B	508	517	anti-parallel
Strand 4	B	384	392	anti-parallel
Strand 5	B	447	455	anti-parallel
Strand 6	B	462	468	anti-parallel
Strand 7	B	475	476	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	350	first strand
Strand 2	B	358	361	anti-parallel
Strand 3	B	508	517	anti-parallel
Strand 4	B	384	392	anti-parallel
Strand 5	B	447	455	anti-parallel
Strand 6	B	462	468	anti-parallel
Strand 7	B	481	482	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	524	529	first strand
Strand 2	B	539	543	anti-parallel
Strand 3	B	586	590	anti-parallel
Strand 4	B	552	558	parallel
Strand 5	B	623	633	parallel
Strand 6	B	677	681	parallel
Strand 7	B	733	739	parallel
Strand 8	B	763	769	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	651	654	first strand
Strand 2	B	657	660	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	44	first strand
Strand 2	C	47	51	anti-parallel
Strand 3	C	60	66	anti-parallel
Strand 4	C	72	79	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	58	first strand
Strand 2	C	339	341	anti-parallel
Strand 3	C	376	379	anti-parallel
Strand 4	C	494	501	anti-parallel
Strand 5	C	400	407	anti-parallel
Strand 6	C	412	419	anti-parallel
Strand 7	C	422	429	anti-parallel
Strand 8	C	436	442	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	109	first strand
Strand 2	C	112	119	anti-parallel
Strand 3	C	124	130	anti-parallel
Strand 4	C	139	143	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	154	first strand
Strand 2	C	160	165	anti-parallel
Strand 3	C	169	174	anti-parallel
Strand 4	C	187	190	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	213	first strand
Strand 2	C	216	225	anti-parallel
Strand 3	C	231	237	anti-parallel
Strand 4	C	245	250	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	262	first strand
Strand 2	C	268	275	anti-parallel
Strand 3	C	281	290	anti-parallel
Strand 4	C	295	297	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	350	first strand
Strand 2	C	358	361	anti-parallel
Strand 3	C	508	517	anti-parallel
Strand 4	C	384	392	anti-parallel
Strand 5	C	447	455	anti-parallel
Strand 6	C	462	468	anti-parallel
Strand 7	C	475	476	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	350	first strand
Strand 2	C	358	361	anti-parallel
Strand 3	C	508	517	anti-parallel
Strand 4	C	384	392	anti-parallel
Strand 5	C	447	455	anti-parallel
Strand 6	C	462	468	anti-parallel
Strand 7	C	481	482	anti-parallel

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There are 8 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	524	529	first strand
Strand 2	C	539	543	anti-parallel
Strand 3	C	586	590	anti-parallel
Strand 4	C	552	558	parallel
Strand 5	C	623	633	parallel
Strand 6	C	677	681	parallel
Strand 7	C	733	739	parallel
Strand 8	C	763	769	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	651	654	first strand
Strand 2	C	657	660	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	44	first strand
Strand 2	D	47	51	anti-parallel
Strand 3	D	60	66	anti-parallel
Strand 4	D	72	79	anti-parallel

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There are 8 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	58	first strand
Strand 2	D	339	341	anti-parallel
Strand 3	D	376	379	anti-parallel
Strand 4	D	494	501	anti-parallel
Strand 5	D	400	407	anti-parallel
Strand 6	D	412	419	anti-parallel
Strand 7	D	422	429	anti-parallel
Strand 8	D	436	443	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	109	first strand
Strand 2	D	112	119	anti-parallel
Strand 3	D	124	130	anti-parallel
Strand 4	D	139	143	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	154	first strand
Strand 2	D	160	165	anti-parallel
Strand 3	D	169	174	anti-parallel
Strand 4	D	187	190	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	201	213	first strand
Strand 2	D	216	225	anti-parallel
Strand 3	D	231	237	anti-parallel
Strand 4	D	245	250	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	262	first strand
Strand 2	D	268	276	anti-parallel
Strand 3	D	280	290	anti-parallel
Strand 4	D	295	297	anti-parallel

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There are 7 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	349	350	first strand
Strand 2	D	358	361	anti-parallel
Strand 3	D	508	517	anti-parallel
Strand 4	D	384	392	anti-parallel
Strand 5	D	447	455	anti-parallel
Strand 6	D	462	468	anti-parallel
Strand 7	D	475	476	anti-parallel

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There are 7 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	349	350	first strand
Strand 2	D	358	361	anti-parallel
Strand 3	D	508	517	anti-parallel
Strand 4	D	384	392	anti-parallel
Strand 5	D	447	455	anti-parallel
Strand 6	D	462	468	anti-parallel
Strand 7	D	481	482	anti-parallel

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There are 8 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	524	529	first strand
Strand 2	D	539	543	anti-parallel
Strand 3	D	586	590	anti-parallel
Strand 4	D	552	558	parallel
Strand 5	D	623	633	parallel
Strand 6	D	677	681	parallel
Strand 7	D	733	739	parallel
Strand 8	D	763	769	parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	651	654	first strand
Strand 2	D	657	660	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MLY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MLY