Analysis of interatomic Contacts of Structural Units in PDB entry:
6MM1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MM1 entry

There are 4 chains in PDB entry 6MM1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 418	ARG 550
B	GLY 419	ASP 552
C	GLY 419	ARG 550
D	SER 418	ASP 552

There are 18 helices in PDB entry 6MM1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	419	423	Right-handed 310
Helix 2	AA2	A	437	442	Right-handed alpha
Helix 3	AA3	A	481	490	Right-handed alpha
Helix 4	AA4	A	520	524	Right-handed 310
Helix 5	AA5	A	539	543	Right-handed 310
Helix 6	AA6	B	435	442	Right-handed alpha
Helix 7	AA7	B	481	490	Right-handed alpha
Helix 8	AA8	B	520	524	Right-handed 310
Helix 9	AA9	B	539	543	Right-handed 310
Helix 10	AB1	C	419	423	Right-handed 310
Helix 11	AB2	C	437	442	Right-handed alpha
Helix 12	AB3	C	481	490	Right-handed alpha
Helix 13	AB4	C	520	524	Right-handed 310
Helix 14	AB5	D	433	436	Right-handed 310
Helix 15	AB6	D	437	442	Right-handed alpha
Helix 16	AB7	D	481	490	Right-handed alpha
Helix 17	AB8	D	520	524	Right-handed 310
Helix 18	AB9	D	539	543	Right-handed 310

There are 12 sheets in PDB entry 6MM1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	458	first strand
Strand 2	A	449	452	anti-parallel
Strand 3	A	500	512	parallel
Strand 4	A	515	519	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	458	first strand
Strand 2	A	449	452	anti-parallel
Strand 3	A	500	512	parallel
Strand 4	A	544	548	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	525	527	first strand
Strand 2	A	530	532	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	457	first strand
Strand 2	B	450	452	anti-parallel
Strand 3	B	500	509	parallel
Strand 4	B	517	519	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	457	first strand
Strand 2	B	450	452	anti-parallel
Strand 3	B	500	509	parallel
Strand 4	B	544	548	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	525	527	first strand
Strand 2	B	530	532	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	449	452	first strand
Strand 2	C	455	458	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	517	519	first strand
Strand 2	C	504	509	anti-parallel
Strand 3	C	544	548	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	525	527	first strand
Strand 2	C	530	532	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	449	452	first strand
Strand 2	D	455	458	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	517	519	first strand
Strand 2	D	504	509	anti-parallel
Strand 3	D	544	548	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	525	527	first strand
Strand 2	D	530	532	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MM1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MM1