Analysis of interatomic Contacts of Structural Units in PDB entry:
6MM7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MM7 entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 8 chains in PDB entry 6MM7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 16	TRP 196
A	LEU 198	VAL 337
A	ILE 339	PHE 350
C	ASN 2699	ARG 2904
D	VAL 15	TRP 196
D	LEU 198	VAL 337
D	ILE 339	PHE 350
E	ASN 2699	ARG 2904

There are 50 helices in PDB entry 6MM7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	32	Right-handed alpha
Helix 2	AA2	A	39	41	Right-handed 310
Helix 3	AA3	A	76	82	Right-handed alpha
Helix 4	AA4	A	84	96	Right-handed alpha
Helix 5	AA5	A	128	136	Right-handed alpha
Helix 6	AA6	A	139	160	Right-handed alpha
Helix 7	AA7	A	168	170	Right-handed 310
Helix 8	AA8	A	201	205	Right-handed 310
Helix 9	AA9	A	206	212	Right-handed alpha
Helix 10	AB1	A	217	234	Right-handed alpha
Helix 11	AB2	A	242	253	Right-handed alpha
Helix 12	AB3	A	262	273	Right-handed alpha
Helix 13	AB4	A	276	280	Right-handed 310
Helix 14	AB5	A	288	293	Right-handed alpha
Helix 15	AB6	A	294	298	Right-handed 310
Helix 16	AB7	A	301	307	Right-handed alpha
Helix 17	AB8	C	2713	2715	Right-handed 310
Helix 18	AB9	C	2716	2738	Right-handed alpha
Helix 19	AC1	C	2758	2762	Right-handed 310
Helix 20	AC2	C	2763	2784	Right-handed alpha
Helix 21	AC3	C	2795	2800	Right-handed alpha
Helix 22	AC4	C	2810	2817	Right-handed alpha
Helix 23	AC5	C	2833	2863	Right-handed alpha
Helix 24	AC6	C	2872	2876	Right-handed 310
Helix 25	AC7	C	2877	2898	Right-handed alpha
Helix 26	AC8	D	16	32	Right-handed alpha
Helix 27	AC9	D	39	41	Right-handed 310
Helix 28	AD1	D	76	82	Right-handed alpha
Helix 29	AD2	D	84	96	Right-handed alpha
Helix 30	AD3	D	128	136	Right-handed alpha
Helix 31	AD4	D	139	160	Right-handed alpha
Helix 32	AD5	D	168	170	Right-handed 310
Helix 33	AD6	D	201	205	Right-handed 310
Helix 34	AD7	D	206	212	Right-handed alpha
Helix 35	AD8	D	217	234	Right-handed alpha
Helix 36	AD9	D	242	253	Right-handed alpha
Helix 37	AE1	D	262	273	Right-handed alpha
Helix 38	AE2	D	276	280	Right-handed 310
Helix 39	AE3	D	288	293	Right-handed alpha
Helix 40	AE4	D	294	298	Right-handed 310
Helix 41	AE5	D	301	307	Right-handed alpha
Helix 42	AE6	E	2713	2715	Right-handed 310
Helix 43	AE7	E	2716	2738	Right-handed alpha
Helix 44	AE8	E	2758	2762	Right-handed 310
Helix 45	AE9	E	2763	2784	Right-handed alpha
Helix 46	AF1	E	2796	2800	Right-handed 310
Helix 47	AF2	E	2810	2817	Right-handed alpha
Helix 48	AF3	E	2833	2863	Right-handed alpha
Helix 49	AF4	E	2872	2876	Right-handed 310
Helix 50	AF5	E	2877	2898	Right-handed alpha

There are 8 sheets in PDB entry 6MM7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	51	first strand
Strand 2	A	56	62	anti-parallel
Strand 3	A	68	75	anti-parallel
Strand 4	A	115	121	anti-parallel
Strand 5	A	106	111	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	A	172	174	anti-parallel
Strand 3	A	180	182	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	163	first strand
Strand 2	A	189	190	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2787	2790	first strand
Strand 2	C	2900	2903	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	51	first strand
Strand 2	D	56	62	anti-parallel
Strand 3	D	68	75	anti-parallel
Strand 4	D	115	121	anti-parallel
Strand 5	D	106	111	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	127	first strand
Strand 2	D	172	174	anti-parallel
Strand 3	D	180	182	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	163	first strand
Strand 2	D	189	190	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2787	2790	first strand
Strand 2	E	2900	2903	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MM7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MM7