Analysis of interatomic Contacts of Structural Units in PDB entry:
6MM8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MM8 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 6MM8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ALA 14TRP 196
C
 LEU 198VAL 337
C
 ILE 339PHE 350
D
 ASN 2699ARG 2904
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6MM8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
14 32Right-handed alpha
Helix 2
AA2
C
39 41Right-handed 310
Helix 3
AA3
C
76 82Right-handed alpha
Helix 4
AA4
C
84 96Right-handed alpha
Helix 5
AA5
C
128 136Right-handed alpha
Helix 6
AA6
C
139 160Right-handed alpha
Helix 7
AA7
C
168 170Right-handed 310
Helix 8
AA8
C
201 205Right-handed 310
Helix 9
AA9
C
206 211Right-handed alpha
Helix 10
AB1
C
217 234Right-handed alpha
Helix 11
AB2
C
242 253Right-handed alpha
Helix 12
AB3
C
262 273Right-handed alpha
Helix 13
AB4
C
276 280Right-handed 310
Helix 14
AB5
C
288 293Right-handed alpha
Helix 15
AB6
C
294 298Right-handed 310
Helix 16
AB7
C
301 307Right-handed alpha
Helix 17
AB8
D
2713 2715Right-handed 310
Helix 18
AB9
D
2716 2738Right-handed alpha
Helix 19
AC1
D
2758 2762Right-handed 310
Helix 20
AC2
D
2763 2784Right-handed alpha
Helix 21
AC3
D
2795 2800Right-handed alpha
Helix 22
AC4
D
2810 2817Right-handed alpha
Helix 23
AC5
D
2826 2830Right-handed 310
Helix 24
AC6
D
2833 2863Right-handed alpha
Helix 25
AC7
D
2872 2876Right-handed 310
Helix 26
AC8
D
2877 2898Right-handed alpha
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There are 4 sheets in PDB entry 6MM8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 51first strand
Strand 2
C
55 62anti-parallel
Strand 3
C
68 75anti-parallel
Strand 4
C
115 121anti-parallel
Strand 5
C
106 111anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
126 127first strand
Strand 2
C
172 174anti-parallel
Strand 3
C
180 182anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
162 163first strand
Strand 2
C
189 190anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2787 2790first strand
Strand 2
D
2900 2903anti-parallel
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