Analysis of interatomic Contacts of Structural Units in PDB entry:
6MM9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MM9 entry

There are 4 chains in PDB entry 6MM9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	LYS 838
B	LEU 34	TRP 837
C	LYS 25	LYS 838
D	LEU 34	TRP 837

There are104 helices in PDB entry 6MM9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	50	Right-handed alpha
Helix 2	AA2	A	70	83	Right-handed alpha
Helix 3	AA3	A	104	112	Right-handed alpha
Helix 4	AA4	A	113	115	Right-handed 310
Helix 5	AA5	A	125	130	Right-handed alpha
Helix 6	AA6	A	144	158	Right-handed alpha
Helix 7	AA7	A	170	188	Right-handed alpha
Helix 8	AA8	A	204	214	Right-handed alpha
Helix 9	AA9	A	224	238	Right-handed alpha
Helix 10	AB1	A	251	255	Right-handed 310
Helix 11	AB2	A	256	262	Right-handed alpha
Helix 12	AB3	A	277	297	Right-handed alpha
Helix 13	AB4	A	317	327	Right-handed alpha
Helix 14	AB5	A	458	470	Right-handed alpha
Helix 15	AB6	A	499	507	Right-handed alpha
Helix 16	AB7	A	520	525	Right-handed alpha
Helix 17	AB8	A	560	583	Right-handed alpha
Helix 18	AB9	A	602	616	Right-handed alpha
Helix 19	AC1	A	628	654	Right-handed alpha
Helix 20	AC2	A	669	674	Right-handed alpha
Helix 21	AC3	A	687	696	Right-handed alpha
Helix 22	AC4	A	699	707	Right-handed alpha
Helix 23	AC5	A	713	723	Right-handed alpha
Helix 24	AC6	A	733	740	Right-handed alpha
Helix 25	AC7	A	769	782	Right-handed alpha
Helix 26	AC8	A	783	792	Right-handed alpha
Helix 27	AC9	A	813	838	Right-handed alpha
Helix 28	AD1	B	42	46	Right-handed 310
Helix 29	AD2	B	48	53	Right-handed alpha
Helix 30	AD3	B	78	91	Right-handed alpha
Helix 31	AD4	B	107	121	Right-handed alpha
Helix 32	AD5	B	128	132	Right-handed 310
Helix 33	AD6	B	150	166	Right-handed alpha
Helix 34	AD7	B	180	194	Right-handed alpha
Helix 35	AD8	B	213	221	Right-handed alpha
Helix 36	AD9	B	232	246	Right-handed alpha
Helix 37	AE1	B	258	263	Right-handed alpha
Helix 38	AE2	B	287	308	Right-handed alpha
Helix 39	AE3	B	458	471	Right-handed alpha
Helix 40	AE4	B	494	502	Right-handed alpha
Helix 41	AE5	B	515	522	Right-handed alpha
Helix 42	AE6	B	556	579	Right-handed alpha
Helix 43	AE7	B	603	611	Right-handed alpha
Helix 44	AE8	B	625	652	Right-handed alpha
Helix 45	AE9	B	688	696	Right-handed alpha
Helix 46	AF1	B	698	706	Right-handed alpha
Helix 47	AF2	B	707	709	Right-handed 310
Helix 48	AF3	B	712	722	Right-handed alpha
Helix 49	AF4	B	732	740	Right-handed alpha
Helix 50	AF5	B	770	784	Right-handed alpha
Helix 51	AF6	B	786	796	Right-handed alpha
Helix 52	AF7	B	815	837	Right-handed alpha
Helix 53	AF8	C	35	50	Right-handed alpha
Helix 54	AF9	C	70	84	Right-handed alpha
Helix 55	AG1	C	104	112	Right-handed alpha
Helix 56	AG2	C	125	130	Right-handed alpha
Helix 57	AG3	C	144	159	Right-handed alpha
Helix 58	AG4	C	170	188	Right-handed alpha
Helix 59	AG5	C	204	213	Right-handed alpha
Helix 60	AG6	C	224	237	Right-handed alpha
Helix 61	AG7	C	251	255	Right-handed 310
Helix 62	AG8	C	256	261	Right-handed alpha
Helix 63	AG9	C	277	296	Right-handed alpha
Helix 64	AH1	C	317	327	Right-handed alpha
Helix 65	AH2	C	458	470	Right-handed alpha
Helix 66	AH3	C	499	507	Right-handed alpha
Helix 67	AH4	C	520	525	Right-handed alpha
Helix 68	AH5	C	561	583	Right-handed alpha
Helix 69	AH6	C	602	616	Right-handed alpha
Helix 70	AH7	C	628	657	Right-handed alpha
Helix 71	AH8	C	669	674	Right-handed alpha
Helix 72	AH9	C	687	696	Right-handed alpha
Helix 73	AI1	C	699	707	Right-handed alpha
Helix 74	AI2	C	713	723	Right-handed alpha
Helix 75	AI3	C	733	743	Right-handed alpha
Helix 76	AI4	C	770	782	Right-handed alpha
Helix 77	AI5	C	783	792	Right-handed alpha
Helix 78	AI6	C	813	838	Right-handed alpha
Helix 79	AI7	D	42	46	Right-handed 310
Helix 80	AI8	D	47	54	Right-handed alpha
Helix 81	AI9	D	78	91	Right-handed alpha
Helix 82	AJ1	D	107	120	Right-handed alpha
Helix 83	AJ2	D	128	132	Right-handed 310
Helix 84	AJ3	D	150	166	Right-handed alpha
Helix 85	AJ4	D	180	193	Right-handed alpha
Helix 86	AJ5	D	214	221	Right-handed alpha
Helix 87	AJ6	D	232	246	Right-handed alpha
Helix 88	AJ7	D	258	263	Right-handed alpha
Helix 89	AJ8	D	287	308	Right-handed alpha
Helix 90	AJ9	D	458	471	Right-handed alpha
Helix 91	AK1	D	494	502	Right-handed alpha
Helix 92	AK2	D	515	522	Right-handed alpha
Helix 93	AK3	D	556	579	Right-handed alpha
Helix 94	AK4	D	603	611	Right-handed alpha
Helix 95	AK5	D	624	655	Right-handed alpha
Helix 96	AK6	D	672	676	Right-handed 310
Helix 97	AK7	D	688	696	Right-handed alpha
Helix 98	AK8	D	698	706	Right-handed alpha
Helix 99	AK9	D	707	709	Right-handed 310
Helix 100	AL1	D	712	722	Right-handed alpha
Helix 101	AL2	D	732	741	Right-handed alpha
Helix 102	AL3	D	771	784	Right-handed alpha
Helix 103	AL4	D	786	796	Right-handed alpha
Helix 104	AL5	D	814	837	Right-handed alpha

There are 25 sheets in PDB entry 6MM9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	65	first strand
Strand 2	A	26	32	parallel
Strand 3	A	90	92	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	120	first strand
Strand 2	A	138	139	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	163	167	parallel
Strand 3	A	218	222	parallel
Strand 4	A	246	249	parallel
Strand 5	A	267	271	parallel
Strand 6	A	351	356	anti-parallel
Strand 7	A	361	367	anti-parallel
Strand 8	A	372	374	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	478	first strand
Strand 2	A	399	402	parallel
Strand 3	A	512	518	parallel
Strand 4	A	753	761	anti-parallel
Strand 5	A	534	543	anti-parallel
Strand 6	A	728	732	anti-parallel
Strand 7	A	681	684	parallel
Strand 8	A	710	711	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	478	first strand
Strand 2	A	399	402	parallel
Strand 3	A	512	518	parallel
Strand 4	A	753	761	anti-parallel
Strand 5	A	534	543	anti-parallel
Strand 6	A	746	748	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	412	first strand
Strand 2	A	450	457	anti-parallel
Strand 3	A	434	439	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	489	first strand
Strand 2	A	496	497	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	73	first strand
Strand 2	B	35	40	parallel
Strand 3	B	97	100	parallel
Strand 4	B	124	126	parallel
Strand 5	B	144	146	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	205	first strand
Strand 2	B	169	174	parallel
Strand 3	B	226	230	parallel
Strand 4	B	254	257	parallel
Strand 5	B	277	280	parallel
Strand 6	B	362	366	anti-parallel
Strand 7	B	372	376	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	474	479	first strand
Strand 2	B	405	410	parallel
Strand 3	B	507	508	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	421	first strand
Strand 2	B	449	457	anti-parallel
Strand 3	B	434	441	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	533	537	first strand
Strand 2	B	727	731	anti-parallel
Strand 3	B	682	683	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	65	first strand
Strand 2	C	26	32	parallel
Strand 3	C	90	92	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	120	first strand
Strand 2	C	138	139	parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	196	first strand
Strand 2	C	164	167	parallel
Strand 3	C	218	222	parallel
Strand 4	C	246	249	parallel
Strand 5	C	267	271	parallel
Strand 6	C	351	356	anti-parallel
Strand 7	C	361	367	anti-parallel
Strand 8	C	372	374	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	475	478	first strand
Strand 2	C	399	402	parallel
Strand 3	C	512	518	parallel
Strand 4	C	753	761	anti-parallel
Strand 5	C	534	542	anti-parallel
Strand 6	C	728	732	anti-parallel
Strand 7	C	681	682	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	475	478	first strand
Strand 2	C	399	402	parallel
Strand 3	C	512	518	parallel
Strand 4	C	753	761	anti-parallel
Strand 5	C	534	542	anti-parallel
Strand 6	C	747	748	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	412	first strand
Strand 2	C	450	457	anti-parallel
Strand 3	C	434	439	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	487	489	first strand
Strand 2	C	496	498	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	73	first strand
Strand 2	D	35	40	parallel
Strand 3	D	95	101	parallel
Strand 4	D	124	126	parallel
Strand 5	D	144	146	parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	205	first strand
Strand 2	D	169	174	parallel
Strand 3	D	226	230	parallel
Strand 4	D	254	257	parallel
Strand 5	D	277	280	parallel
Strand 6	D	362	366	anti-parallel
Strand 7	D	372	376	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	410	first strand
Strand 2	D	474	479	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	418	420	first strand
Strand 2	D	449	457	anti-parallel
Strand 3	D	434	441	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	507	508	first strand
Strand 2	D	764	765	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	682	683	first strand
Strand 2	D	727	731	parallel
Strand 3	D	533	537	anti-parallel
Strand 4	D	748	749	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MM9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MM9