Analysis of interatomic Contacts of Structural Units in PDB entry:
6MMJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MMJ entry

There are 4 chains in PDB entry 6MMJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	LYS 838
B	LEU 34	TRP 837
C	LYS 25	LYS 838
D	LEU 34	TRP 837

There are102 helices in PDB entry 6MMJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	49	Right-handed alpha
Helix 2	AA2	A	71	84	Right-handed alpha
Helix 3	AA3	A	104	114	Right-handed alpha
Helix 4	AA4	A	143	158	Right-handed alpha
Helix 5	AA5	A	170	188	Right-handed alpha
Helix 6	AA6	A	204	213	Right-handed alpha
Helix 7	AA7	A	224	239	Right-handed alpha
Helix 8	AA8	A	251	255	Right-handed 310
Helix 9	AA9	A	256	261	Right-handed alpha
Helix 10	AB1	A	276	298	Right-handed alpha
Helix 11	AB2	A	317	327	Right-handed alpha
Helix 12	AB3	A	458	470	Right-handed alpha
Helix 13	AB4	A	500	506	Right-handed alpha
Helix 14	AB5	A	520	525	Right-handed alpha
Helix 15	AB6	A	560	583	Right-handed alpha
Helix 16	AB7	A	602	614	Right-handed alpha
Helix 17	AB8	A	629	655	Right-handed alpha
Helix 18	AB9	A	669	673	Right-handed 310
Helix 19	AC1	A	687	696	Right-handed alpha
Helix 20	AC2	A	699	708	Right-handed alpha
Helix 21	AC3	A	713	723	Right-handed alpha
Helix 22	AC4	A	733	743	Right-handed alpha
Helix 23	AC5	A	766	782	Right-handed alpha
Helix 24	AC6	A	783	792	Right-handed alpha
Helix 25	AC7	A	813	838	Right-handed alpha
Helix 26	AC8	B	42	46	Right-handed 310
Helix 27	AC9	B	48	54	Right-handed alpha
Helix 28	AD1	B	78	90	Right-handed alpha
Helix 29	AD2	B	107	119	Right-handed alpha
Helix 30	AD3	B	128	132	Right-handed 310
Helix 31	AD4	B	150	165	Right-handed alpha
Helix 32	AD5	B	180	193	Right-handed alpha
Helix 33	AD6	B	214	221	Right-handed alpha
Helix 34	AD7	B	232	246	Right-handed alpha
Helix 35	AD8	B	258	263	Right-handed alpha
Helix 36	AD9	B	287	308	Right-handed alpha
Helix 37	AE1	B	459	471	Right-handed alpha
Helix 38	AE2	B	495	502	Right-handed alpha
Helix 39	AE3	B	515	522	Right-handed alpha
Helix 40	AE4	B	556	579	Right-handed alpha
Helix 41	AE5	B	603	614	Right-handed alpha
Helix 42	AE6	B	624	653	Right-handed alpha
Helix 43	AE7	B	667	672	Right-handed alpha
Helix 44	AE8	B	673	676	Right-handed 310
Helix 45	AE9	B	688	696	Right-handed alpha
Helix 46	AF1	B	698	708	Right-handed alpha
Helix 47	AF2	B	712	722	Right-handed alpha
Helix 48	AF3	B	732	741	Right-handed alpha
Helix 49	AF4	B	771	784	Right-handed alpha
Helix 50	AF5	B	786	795	Right-handed alpha
Helix 51	AF6	B	814	837	Right-handed alpha
Helix 52	AF7	C	35	50	Right-handed alpha
Helix 53	AF8	C	70	80	Right-handed alpha
Helix 54	AF9	C	104	114	Right-handed alpha
Helix 55	AG1	C	125	130	Right-handed 310
Helix 56	AG2	C	144	159	Right-handed alpha
Helix 57	AG3	C	170	186	Right-handed alpha
Helix 58	AG4	C	204	213	Right-handed alpha
Helix 59	AG5	C	224	237	Right-handed alpha
Helix 60	AG6	C	251	255	Right-handed 310
Helix 61	AG7	C	256	262	Right-handed alpha
Helix 62	AG8	C	276	298	Right-handed alpha
Helix 63	AG9	C	317	327	Right-handed alpha
Helix 64	AH1	C	458	470	Right-handed alpha
Helix 65	AH2	C	500	506	Right-handed alpha
Helix 66	AH3	C	520	525	Right-handed alpha
Helix 67	AH4	C	560	583	Right-handed alpha
Helix 68	AH5	C	602	615	Right-handed alpha
Helix 69	AH6	C	628	655	Right-handed alpha
Helix 70	AH7	C	669	674	Right-handed alpha
Helix 71	AH8	C	687	696	Right-handed alpha
Helix 72	AH9	C	699	707	Right-handed alpha
Helix 73	AI1	C	708	710	Right-handed 310
Helix 74	AI2	C	713	723	Right-handed alpha
Helix 75	AI3	C	733	741	Right-handed alpha
Helix 76	AI4	C	769	782	Right-handed alpha
Helix 77	AI5	C	783	792	Right-handed alpha
Helix 78	AI6	C	814	838	Right-handed alpha
Helix 79	AI7	D	42	46	Right-handed 310
Helix 80	AI8	D	48	54	Right-handed alpha
Helix 81	AI9	D	78	91	Right-handed alpha
Helix 82	AJ1	D	107	120	Right-handed alpha
Helix 83	AJ2	D	128	133	Right-handed 310
Helix 84	AJ3	D	150	165	Right-handed alpha
Helix 85	AJ4	D	180	194	Right-handed alpha
Helix 86	AJ5	D	214	221	Right-handed alpha
Helix 87	AJ6	D	232	246	Right-handed alpha
Helix 88	AJ7	D	258	263	Right-handed alpha
Helix 89	AJ8	D	287	308	Right-handed alpha
Helix 90	AJ9	D	459	471	Right-handed alpha
Helix 91	AK1	D	496	501	Right-handed alpha
Helix 92	AK2	D	515	522	Right-handed alpha
Helix 93	AK3	D	557	579	Right-handed alpha
Helix 94	AK4	D	603	610	Right-handed alpha
Helix 95	AK5	D	626	653	Right-handed alpha
Helix 96	AK6	D	688	696	Right-handed alpha
Helix 97	AK7	D	698	707	Right-handed alpha
Helix 98	AK8	D	712	723	Right-handed alpha
Helix 99	AK9	D	732	740	Right-handed alpha
Helix 100	AL1	D	771	784	Right-handed alpha
Helix 101	AL2	D	786	796	Right-handed alpha
Helix 102	AL3	D	815	837	Right-handed alpha

There are 29 sheets in PDB entry 6MMJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	64	first strand
Strand 2	A	28	32	parallel
Strand 3	A	90	92	parallel
Strand 4	A	118	120	parallel
Strand 5	A	137	139	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	196	first strand
Strand 2	A	164	167	parallel
Strand 3	A	218	222	parallel
Strand 4	A	246	248	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	271	first strand
Strand 2	A	351	356	anti-parallel
Strand 3	A	361	367	anti-parallel
Strand 4	A	372	373	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	474	478	first strand
Strand 2	A	398	402	parallel
Strand 3	A	512	518	parallel
Strand 4	A	753	761	anti-parallel
Strand 5	A	534	541	anti-parallel
Strand 6	A	728	732	anti-parallel
Strand 7	A	681	682	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	412	first strand
Strand 2	A	450	457	anti-parallel
Strand 3	A	434	439	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	489	first strand
Strand 2	A	496	497	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	73	first strand
Strand 2	B	36	40	parallel
Strand 3	B	98	99	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	126	first strand
Strand 2	B	145	146	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	206	first strand
Strand 2	B	170	175	parallel
Strand 3	B	226	230	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	257	first strand
Strand 2	B	276	280	parallel
Strand 3	B	362	366	anti-parallel
Strand 4	B	372	378	anti-parallel
Strand 5	B	383	384	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	406	410	first strand
Strand 2	B	475	479	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	421	first strand
Strand 2	B	449	458	anti-parallel
Strand 3	B	434	441	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	507	508	first strand
Strand 2	B	764	765	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	533	536	first strand
Strand 2	B	727	731	anti-parallel
Strand 3	B	682	683	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	65	first strand
Strand 2	C	27	32	parallel
Strand 3	C	87	92	parallel
Strand 4	C	118	120	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	196	first strand
Strand 2	C	164	167	parallel
Strand 3	C	218	222	parallel
Strand 4	C	246	248	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	271	first strand
Strand 2	C	351	356	anti-parallel
Strand 3	C	361	367	anti-parallel
Strand 4	C	372	374	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	475	478	first strand
Strand 2	C	399	402	parallel
Strand 3	C	512	513	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	412	first strand
Strand 2	C	450	457	anti-parallel
Strand 3	C	434	439	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	488	489	first strand
Strand 2	C	496	497	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	517	518	first strand
Strand 2	C	753	759	anti-parallel
Strand 3	C	534	542	anti-parallel
Strand 4	C	730	732	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	517	518	first strand
Strand 2	C	753	759	anti-parallel
Strand 3	C	534	542	anti-parallel
Strand 4	C	747	748	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	73	first strand
Strand 2	D	36	40	parallel
Strand 3	D	97	100	parallel
Strand 4	D	124	126	parallel
Strand 5	D	145	146	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	206	first strand
Strand 2	D	173	175	parallel
Strand 3	D	229	230	parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	257	first strand
Strand 2	D	276	280	parallel
Strand 3	D	362	366	anti-parallel
Strand 4	D	372	378	anti-parallel
Strand 5	D	383	384	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	406	first strand
Strand 2	D	474	475	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	409	410	first strand
Strand 2	D	478	479	parallel
Strand 3	D	434	441	parallel
Strand 4	D	449	458	anti-parallel
Strand 5	D	417	421	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	529	530	first strand
Strand 2	D	760	761	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	533	537	first strand
Strand 2	D	727	731	anti-parallel
Strand 3	D	682	683	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MMJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MMJ