Analysis of interatomic Contacts of Structural Units in PDB entry:
6MMP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MMP entry

There are 4 chains in PDB entry 6MMP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	LYS 838
B	LEU 34	TRP 837
C	LYS 25	LYS 838
D	LEU 34	TRP 837

There are100 helices in PDB entry 6MMP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	50	Right-handed alpha
Helix 2	AA2	A	71	86	Right-handed alpha
Helix 3	AA3	A	104	114	Right-handed alpha
Helix 4	AA4	A	125	130	Right-handed 310
Helix 5	AA5	A	144	156	Right-handed alpha
Helix 6	AA6	A	169	185	Right-handed alpha
Helix 7	AA7	A	204	213	Right-handed alpha
Helix 8	AA8	A	224	239	Right-handed alpha
Helix 9	AA9	A	251	255	Right-handed 310
Helix 10	AB1	A	256	261	Right-handed alpha
Helix 11	AB2	A	276	296	Right-handed alpha
Helix 12	AB3	A	317	327	Right-handed alpha
Helix 13	AB4	A	458	470	Right-handed alpha
Helix 14	AB5	A	499	506	Right-handed alpha
Helix 15	AB6	A	520	525	Right-handed alpha
Helix 16	AB7	A	561	584	Right-handed alpha
Helix 17	AB8	A	603	614	Right-handed alpha
Helix 18	AB9	A	628	657	Right-handed alpha
Helix 19	AC1	A	665	668	Right-handed 310
Helix 20	AC2	A	669	674	Right-handed alpha
Helix 21	AC3	A	687	696	Right-handed alpha
Helix 22	AC4	A	699	704	Right-handed alpha
Helix 23	AC5	A	705	709	Right-handed 310
Helix 24	AC6	A	713	723	Right-handed alpha
Helix 25	AC7	A	733	743	Right-handed alpha
Helix 26	AC8	A	769	782	Right-handed alpha
Helix 27	AC9	A	783	792	Right-handed alpha
Helix 28	AD1	A	812	838	Right-handed alpha
Helix 29	AD2	B	48	53	Right-handed alpha
Helix 30	AD3	B	78	91	Right-handed alpha
Helix 31	AD4	B	107	121	Right-handed alpha
Helix 32	AD5	B	128	133	Right-handed 310
Helix 33	AD6	B	150	165	Right-handed alpha
Helix 34	AD7	B	179	192	Right-handed alpha
Helix 35	AD8	B	214	221	Right-handed alpha
Helix 36	AD9	B	232	247	Right-handed alpha
Helix 37	AE1	B	287	308	Right-handed alpha
Helix 38	AE2	B	333	337	Right-handed 310
Helix 39	AE3	B	458	471	Right-handed alpha
Helix 40	AE4	B	495	502	Right-handed alpha
Helix 41	AE5	B	515	522	Right-handed alpha
Helix 42	AE6	B	556	579	Right-handed alpha
Helix 43	AE7	B	603	613	Right-handed alpha
Helix 44	AE8	B	624	655	Right-handed alpha
Helix 45	AE9	B	667	671	Right-handed 310
Helix 46	AF1	B	688	698	Right-handed alpha
Helix 47	AF2	B	698	707	Right-handed alpha
Helix 48	AF3	B	712	723	Right-handed alpha
Helix 49	AF4	B	732	741	Right-handed alpha
Helix 50	AF5	B	770	784	Right-handed alpha
Helix 51	AF6	B	786	796	Right-handed alpha
Helix 52	AF7	B	813	834	Right-handed alpha
Helix 53	AF8	C	35	50	Right-handed alpha
Helix 54	AF9	C	71	86	Right-handed alpha
Helix 55	AG1	C	104	114	Right-handed alpha
Helix 56	AG2	C	144	158	Right-handed alpha
Helix 57	AG3	C	169	188	Right-handed alpha
Helix 58	AG4	C	204	213	Right-handed alpha
Helix 59	AG5	C	224	238	Right-handed alpha
Helix 60	AG6	C	251	255	Right-handed 310
Helix 61	AG7	C	256	261	Right-handed alpha
Helix 62	AG8	C	276	296	Right-handed alpha
Helix 63	AG9	C	317	327	Right-handed alpha
Helix 64	AH1	C	458	470	Right-handed alpha
Helix 65	AH2	C	499	507	Right-handed alpha
Helix 66	AH3	C	520	527	Right-handed alpha
Helix 67	AH4	C	561	584	Right-handed alpha
Helix 68	AH5	C	606	614	Right-handed alpha
Helix 69	AH6	C	628	656	Right-handed alpha
Helix 70	AH7	C	665	668	Right-handed 310
Helix 71	AH8	C	669	674	Right-handed alpha
Helix 72	AH9	C	687	696	Right-handed alpha
Helix 73	AI1	C	699	707	Right-handed alpha
Helix 74	AI2	C	713	723	Right-handed alpha
Helix 75	AI3	C	733	743	Right-handed alpha
Helix 76	AI4	C	769	782	Right-handed alpha
Helix 77	AI5	C	783	792	Right-handed alpha
Helix 78	AI6	C	813	838	Right-handed alpha
Helix 79	AI7	D	48	53	Right-handed alpha
Helix 80	AI8	D	78	91	Right-handed alpha
Helix 81	AI9	D	107	121	Right-handed alpha
Helix 82	AJ1	D	128	133	Right-handed 310
Helix 83	AJ2	D	150	165	Right-handed alpha
Helix 84	AJ3	D	180	193	Right-handed alpha
Helix 85	AJ4	D	214	220	Right-handed alpha
Helix 86	AJ5	D	232	246	Right-handed alpha
Helix 87	AJ6	D	287	308	Right-handed alpha
Helix 88	AJ7	D	459	472	Right-handed alpha
Helix 89	AJ8	D	494	501	Right-handed alpha
Helix 90	AJ9	D	515	522	Right-handed alpha
Helix 91	AK1	D	556	579	Right-handed alpha
Helix 92	AK2	D	603	614	Right-handed alpha
Helix 93	AK3	D	624	655	Right-handed alpha
Helix 94	AK4	D	688	698	Right-handed alpha
Helix 95	AK5	D	698	707	Right-handed alpha
Helix 96	AK6	D	712	722	Right-handed alpha
Helix 97	AK7	D	732	740	Right-handed alpha
Helix 98	AK8	D	771	784	Right-handed alpha
Helix 99	AK9	D	786	796	Right-handed alpha
Helix 100	AL1	D	813	837	Right-handed alpha

There are 26 sheets in PDB entry 6MMP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	65	first strand
Strand 2	A	26	32	parallel
Strand 3	A	87	92	parallel
Strand 4	A	118	120	parallel
Strand 5	A	137	139	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	167	first strand
Strand 2	A	218	222	parallel
Strand 3	A	246	248	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	271	first strand
Strand 2	A	351	356	anti-parallel
Strand 3	A	361	367	anti-parallel
Strand 4	A	372	374	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	476	first strand
Strand 2	A	397	401	parallel
Strand 3	A	512	518	parallel
Strand 4	A	753	761	anti-parallel
Strand 5	A	534	540	anti-parallel
Strand 6	A	728	732	anti-parallel
Strand 7	A	681	682	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	412	first strand
Strand 2	A	450	457	anti-parallel
Strand 3	A	434	439	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	490	first strand
Strand 2	A	495	497	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	542	543	first strand
Strand 2	A	746	747	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	74	first strand
Strand 2	B	35	41	parallel
Strand 3	B	97	102	parallel
Strand 4	B	124	126	parallel
Strand 5	B	144	145	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	205	first strand
Strand 2	B	169	174	parallel
Strand 3	B	226	230	parallel
Strand 4	B	254	257	parallel
Strand 5	B	277	280	parallel
Strand 6	B	362	366	anti-parallel
Strand 7	B	372	377	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	410	first strand
Strand 2	B	474	479	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	420	first strand
Strand 2	B	449	457	anti-parallel
Strand 3	B	434	441	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	523	524	first strand
Strand 2	B	764	765	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	533	536	first strand
Strand 2	B	727	731	anti-parallel
Strand 3	B	682	683	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	65	first strand
Strand 2	C	26	32	parallel
Strand 3	C	87	92	parallel
Strand 4	C	118	120	parallel
Strand 5	C	137	139	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	167	first strand
Strand 2	C	218	222	parallel
Strand 3	C	246	248	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	271	first strand
Strand 2	C	351	356	anti-parallel
Strand 3	C	361	367	anti-parallel
Strand 4	C	372	374	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	478	first strand
Strand 2	C	397	402	parallel
Strand 3	C	512	518	parallel
Strand 4	C	753	761	anti-parallel
Strand 5	C	534	540	anti-parallel
Strand 6	C	728	732	anti-parallel
Strand 7	C	681	682	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	412	first strand
Strand 2	C	450	457	anti-parallel
Strand 3	C	434	439	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	488	489	first strand
Strand 2	C	496	497	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	542	543	first strand
Strand 2	C	746	747	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	74	first strand
Strand 2	D	35	41	parallel
Strand 3	D	97	102	parallel
Strand 4	D	124	126	parallel
Strand 5	D	144	146	parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	205	first strand
Strand 2	D	169	174	parallel
Strand 3	D	226	230	parallel
Strand 4	D	254	257	parallel
Strand 5	D	277	280	parallel
Strand 6	D	362	366	anti-parallel
Strand 7	D	372	377	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	474	479	first strand
Strand 2	D	405	410	parallel
Strand 3	D	507	508	parallel
Strand 4	D	764	765	anti-parallel
Strand 5	D	523	524	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	417	420	first strand
Strand 2	D	449	458	anti-parallel
Strand 3	D	434	441	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	529	530	first strand
Strand 2	D	760	761	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	533	536	first strand
Strand 2	D	727	731	anti-parallel
Strand 3	D	682	683	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MMP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MMP