Analysis of interatomic Contacts of Structural Units in PDB entry:
6MMS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MMS entry

There are 4 chains in PDB entry 6MMS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	LYS 838
B	LEU 34	TRP 837
C	LYS 25	LYS 838
D	LEU 34	TRP 837

There are106 helices in PDB entry 6MMS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	50	Right-handed alpha
Helix 2	AA2	A	71	82	Right-handed alpha
Helix 3	AA3	A	104	114	Right-handed alpha
Helix 4	AA4	A	125	130	Right-handed 310
Helix 5	AA5	A	144	158	Right-handed alpha
Helix 6	AA6	A	169	188	Right-handed alpha
Helix 7	AA7	A	204	213	Right-handed alpha
Helix 8	AA8	A	224	238	Right-handed alpha
Helix 9	AA9	A	250	254	Right-handed 310
Helix 10	AB1	A	256	261	Right-handed alpha
Helix 11	AB2	A	277	296	Right-handed alpha
Helix 12	AB3	A	317	327	Right-handed alpha
Helix 13	AB4	A	457	470	Right-handed alpha
Helix 14	AB5	A	499	506	Right-handed alpha
Helix 15	AB6	A	520	527	Right-handed alpha
Helix 16	AB7	A	562	584	Right-handed alpha
Helix 17	AB8	A	602	614	Right-handed alpha
Helix 18	AB9	A	628	655	Right-handed alpha
Helix 19	AC1	A	665	668	Right-handed 310
Helix 20	AC2	A	669	674	Right-handed alpha
Helix 21	AC3	A	687	696	Right-handed alpha
Helix 22	AC4	A	699	707	Right-handed alpha
Helix 23	AC5	A	708	710	Right-handed 310
Helix 24	AC6	A	713	723	Right-handed alpha
Helix 25	AC7	A	733	740	Right-handed alpha
Helix 26	AC8	A	766	769	Right-handed 310
Helix 27	AC9	A	770	782	Right-handed alpha
Helix 28	AD1	A	783	792	Right-handed alpha
Helix 29	AD2	A	813	834	Right-handed alpha
Helix 30	AD3	B	78	92	Right-handed alpha
Helix 31	AD4	B	107	121	Right-handed alpha
Helix 32	AD5	B	128	132	Right-handed 310
Helix 33	AD6	B	150	165	Right-handed alpha
Helix 34	AD7	B	180	192	Right-handed alpha
Helix 35	AD8	B	213	221	Right-handed alpha
Helix 36	AD9	B	232	246	Right-handed alpha
Helix 37	AE1	B	287	308	Right-handed alpha
Helix 38	AE2	B	333	337	Right-handed 310
Helix 39	AE3	B	458	471	Right-handed alpha
Helix 40	AE4	B	495	502	Right-handed alpha
Helix 41	AE5	B	515	520	Right-handed alpha
Helix 42	AE6	B	556	579	Right-handed alpha
Helix 43	AE7	B	603	609	Right-handed alpha
Helix 44	AE8	B	610	613	Right-handed 310
Helix 45	AE9	B	624	655	Right-handed alpha
Helix 46	AF1	B	667	672	Right-handed alpha
Helix 47	AF2	B	673	676	Right-handed 310
Helix 48	AF3	B	688	698	Right-handed alpha
Helix 49	AF4	B	698	707	Right-handed alpha
Helix 50	AF5	B	712	722	Right-handed alpha
Helix 51	AF6	B	732	739	Right-handed alpha
Helix 52	AF7	B	740	742	Right-handed 310
Helix 53	AF8	B	770	784	Right-handed alpha
Helix 54	AF9	B	786	795	Right-handed alpha
Helix 55	AG1	B	813	837	Right-handed alpha
Helix 56	AG2	C	36	50	Right-handed alpha
Helix 57	AG3	C	70	86	Right-handed alpha
Helix 58	AG4	C	104	114	Right-handed alpha
Helix 59	AG5	C	125	130	Right-handed 310
Helix 60	AG6	C	143	146	Right-handed 310
Helix 61	AG7	C	147	158	Right-handed alpha
Helix 62	AG8	C	172	184	Right-handed alpha
Helix 63	AG9	C	204	213	Right-handed alpha
Helix 64	AH1	C	224	238	Right-handed alpha
Helix 65	AH2	C	251	255	Right-handed 310
Helix 66	AH3	C	276	296	Right-handed alpha
Helix 67	AH4	C	317	327	Right-handed alpha
Helix 68	AH5	C	458	470	Right-handed alpha
Helix 69	AH6	C	499	507	Right-handed alpha
Helix 70	AH7	C	520	525	Right-handed alpha
Helix 71	AH8	C	561	583	Right-handed alpha
Helix 72	AH9	C	602	614	Right-handed alpha
Helix 73	AI1	C	628	653	Right-handed alpha
Helix 74	AI2	C	654	656	Right-handed 310
Helix 75	AI3	C	669	674	Right-handed alpha
Helix 76	AI4	C	687	696	Right-handed alpha
Helix 77	AI5	C	699	707	Right-handed alpha
Helix 78	AI6	C	713	723	Right-handed alpha
Helix 79	AI7	C	733	743	Right-handed alpha
Helix 80	AI8	C	769	782	Right-handed alpha
Helix 81	AI9	C	783	792	Right-handed alpha
Helix 82	AJ1	C	813	838	Right-handed alpha
Helix 83	AJ2	D	48	53	Right-handed alpha
Helix 84	AJ3	D	78	92	Right-handed alpha
Helix 85	AJ4	D	107	121	Right-handed alpha
Helix 86	AJ5	D	150	165	Right-handed alpha
Helix 87	AJ6	D	179	192	Right-handed alpha
Helix 88	AJ7	D	212	221	Right-handed alpha
Helix 89	AJ8	D	232	246	Right-handed alpha
Helix 90	AJ9	D	287	308	Right-handed alpha
Helix 91	AK1	D	459	471	Right-handed alpha
Helix 92	AK2	D	495	502	Right-handed alpha
Helix 93	AK3	D	515	522	Right-handed alpha
Helix 94	AK4	D	556	579	Right-handed alpha
Helix 95	AK5	D	603	613	Right-handed alpha
Helix 96	AK6	D	626	655	Right-handed alpha
Helix 97	AK7	D	667	671	Right-handed 310
Helix 98	AK8	D	672	676	Right-handed 310
Helix 99	AK9	D	688	696	Right-handed alpha
Helix 100	AL1	D	698	708	Right-handed alpha
Helix 101	AL2	D	712	722	Right-handed alpha
Helix 102	AL3	D	732	740	Right-handed alpha
Helix 103	AL4	D	770	785	Right-handed alpha
Helix 104	AL5	D	786	796	Right-handed alpha
Helix 105	AL6	D	813	830	Right-handed alpha
Helix 106	AL7	D	831	833	Right-handed 310

There are 33 sheets in PDB entry 6MMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	65	first strand
Strand 2	A	26	32	parallel
Strand 3	A	87	92	parallel
Strand 4	A	118	120	parallel
Strand 5	A	137	139	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	167	first strand
Strand 2	A	218	222	parallel
Strand 3	A	246	248	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	271	first strand
Strand 2	A	351	356	anti-parallel
Strand 3	A	361	367	anti-parallel
Strand 4	A	372	374	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	478	first strand
Strand 2	A	399	402	parallel
Strand 3	A	512	518	parallel
Strand 4	A	753	761	anti-parallel
Strand 5	A	534	543	anti-parallel
Strand 6	A	728	732	anti-parallel
Strand 7	A	681	682	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	478	first strand
Strand 2	A	399	402	parallel
Strand 3	A	512	518	parallel
Strand 4	A	753	761	anti-parallel
Strand 5	A	534	543	anti-parallel
Strand 6	A	746	748	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	412	first strand
Strand 2	A	450	456	anti-parallel
Strand 3	A	434	439	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	490	first strand
Strand 2	A	495	497	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	74	first strand
Strand 2	B	35	41	parallel
Strand 3	B	97	102	parallel
Strand 4	B	124	126	parallel
Strand 5	B	144	146	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	206	first strand
Strand 2	B	169	175	parallel
Strand 3	B	226	230	parallel
Strand 4	B	254	258	parallel
Strand 5	B	277	280	parallel
Strand 6	B	362	366	anti-parallel
Strand 7	B	372	377	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	343	first strand
Strand 2	B	346	347	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	474	478	first strand
Strand 2	B	405	409	parallel
Strand 3	B	507	508	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	420	first strand
Strand 2	B	455	457	anti-parallel
Strand 3	B	434	435	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	438	441	first strand
Strand 2	B	449	452	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	523	524	first strand
Strand 2	B	764	765	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	529	531	first strand
Strand 2	B	759	761	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	533	535	first strand
Strand 2	B	727	731	anti-parallel
Strand 3	B	682	683	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	65	first strand
Strand 2	C	27	33	parallel
Strand 3	C	87	93	parallel
Strand 4	C	118	120	parallel
Strand 5	C	137	139	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	196	first strand
Strand 2	C	163	167	parallel
Strand 3	C	218	222	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	271	first strand
Strand 2	C	351	356	anti-parallel
Strand 3	C	361	363	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	366	367	first strand
Strand 2	C	372	373	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	478	first strand
Strand 2	C	397	402	parallel
Strand 3	C	512	518	parallel
Strand 4	C	753	761	anti-parallel
Strand 5	C	535	543	anti-parallel
Strand 6	C	728	732	anti-parallel
Strand 7	C	681	682	parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	478	first strand
Strand 2	C	397	402	parallel
Strand 3	C	512	518	parallel
Strand 4	C	753	761	anti-parallel
Strand 5	C	535	543	anti-parallel
Strand 6	C	746	748	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	413	first strand
Strand 2	C	453	457	anti-parallel
Strand 3	C	434	436	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	487	489	first strand
Strand 2	C	496	498	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	74	first strand
Strand 2	D	35	41	parallel
Strand 3	D	97	102	parallel
Strand 4	D	124	126	parallel
Strand 5	D	144	145	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	200	first strand
Strand 2	D	169	174	parallel
Strand 3	D	204	205	parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	200	first strand
Strand 2	D	169	174	parallel
Strand 3	D	226	230	parallel
Strand 4	D	254	257	parallel
Strand 5	D	277	280	parallel
Strand 6	D	362	366	anti-parallel
Strand 7	D	372	377	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	342	343	first strand
Strand 2	D	346	347	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	410	first strand
Strand 2	D	474	479	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	418	420	first strand
Strand 2	D	449	457	anti-parallel
Strand 3	D	434	441	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	507	508	first strand
Strand 2	D	764	765	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	530	531	first strand
Strand 2	D	759	760	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	682	683	first strand
Strand 2	D	727	731	parallel
Strand 3	D	533	537	anti-parallel
Strand 4	D	748	749	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MMS

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MMS