Analysis of interatomic Contacts of Structural Units in PDB entry:
6MMV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MMV entry

There are 4 chains in PDB entry 6MMV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	GLU 797
B	LEU 34	CYS 800
C	LYS 25	GLU 797
D	LEU 34	CYS 800

There are 88 helices in PDB entry 6MMV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	52	Right-handed alpha
Helix 2	AA2	A	70	82	Right-handed alpha
Helix 3	AA3	A	104	112	Right-handed alpha
Helix 4	AA4	A	113	115	Right-handed 310
Helix 5	AA5	A	125	130	Right-handed alpha
Helix 6	AA6	A	143	145	Right-handed 310
Helix 7	AA7	A	146	158	Right-handed alpha
Helix 8	AA8	A	170	184	Right-handed alpha
Helix 9	AA9	A	204	213	Right-handed alpha
Helix 10	AB1	A	224	238	Right-handed alpha
Helix 11	AB2	A	256	262	Right-handed alpha
Helix 12	AB3	A	276	296	Right-handed alpha
Helix 13	AB4	A	317	327	Right-handed alpha
Helix 14	AB5	A	458	470	Right-handed alpha
Helix 15	AB6	A	491	494	Right-handed 310
Helix 16	AB7	A	499	507	Right-handed alpha
Helix 17	AB8	A	520	525	Right-handed alpha
Helix 18	AB9	A	669	674	Right-handed alpha
Helix 19	AC1	A	687	696	Right-handed alpha
Helix 20	AC2	A	699	706	Right-handed alpha
Helix 21	AC3	A	707	709	Right-handed 310
Helix 22	AC4	A	713	723	Right-handed alpha
Helix 23	AC5	A	733	743	Right-handed alpha
Helix 24	AC6	A	768	782	Right-handed alpha
Helix 25	AC7	A	783	792	Right-handed alpha
Helix 26	AC8	B	48	54	Right-handed alpha
Helix 27	AC9	B	78	90	Right-handed alpha
Helix 28	AD1	B	107	121	Right-handed alpha
Helix 29	AD2	B	128	132	Right-handed 310
Helix 30	AD3	B	150	165	Right-handed alpha
Helix 31	AD4	B	179	193	Right-handed alpha
Helix 32	AD5	B	214	220	Right-handed alpha
Helix 33	AD6	B	232	246	Right-handed alpha
Helix 34	AD7	B	258	263	Right-handed alpha
Helix 35	AD8	B	287	308	Right-handed alpha
Helix 36	AD9	B	458	471	Right-handed alpha
Helix 37	AE1	B	494	502	Right-handed alpha
Helix 38	AE2	B	515	522	Right-handed alpha
Helix 39	AE3	B	688	698	Right-handed alpha
Helix 40	AE4	B	698	706	Right-handed alpha
Helix 41	AE5	B	712	722	Right-handed alpha
Helix 42	AE6	B	732	741	Right-handed alpha
Helix 43	AE7	B	742	746	Right-handed 310
Helix 44	AE8	B	771	784	Right-handed alpha
Helix 45	AE9	B	786	795	Right-handed alpha
Helix 46	AF1	C	36	50	Right-handed alpha
Helix 47	AF2	C	70	84	Right-handed alpha
Helix 48	AF3	C	104	114	Right-handed alpha
Helix 49	AF4	C	125	129	Right-handed 310
Helix 50	AF5	C	144	159	Right-handed alpha
Helix 51	AF6	C	172	184	Right-handed alpha
Helix 52	AF7	C	204	213	Right-handed alpha
Helix 53	AF8	C	224	237	Right-handed alpha
Helix 54	AF9	C	250	254	Right-handed 310
Helix 55	AG1	C	255	261	Right-handed alpha
Helix 56	AG2	C	276	296	Right-handed alpha
Helix 57	AG3	C	317	327	Right-handed alpha
Helix 58	AG4	C	458	470	Right-handed alpha
Helix 59	AG5	C	491	494	Right-handed 310
Helix 60	AG6	C	499	507	Right-handed alpha
Helix 61	AG7	C	520	525	Right-handed alpha
Helix 62	AG8	C	669	673	Right-handed 310
Helix 63	AG9	C	687	696	Right-handed alpha
Helix 64	AH1	C	699	707	Right-handed alpha
Helix 65	AH2	C	713	723	Right-handed alpha
Helix 66	AH3	C	733	743	Right-handed alpha
Helix 67	AH4	C	769	782	Right-handed alpha
Helix 68	AH5	C	783	792	Right-handed alpha
Helix 69	AH6	D	48	54	Right-handed alpha
Helix 70	AH7	D	78	92	Right-handed alpha
Helix 71	AH8	D	107	121	Right-handed alpha
Helix 72	AH9	D	128	132	Right-handed 310
Helix 73	AI1	D	150	165	Right-handed alpha
Helix 74	AI2	D	180	192	Right-handed alpha
Helix 75	AI3	D	214	221	Right-handed alpha
Helix 76	AI4	D	232	246	Right-handed alpha
Helix 77	AI5	D	287	307	Right-handed alpha
Helix 78	AI6	D	333	337	Right-handed 310
Helix 79	AI7	D	459	471	Right-handed alpha
Helix 80	AI8	D	494	502	Right-handed alpha
Helix 81	AI9	D	515	522	Right-handed alpha
Helix 82	AJ1	D	667	672	Right-handed 310
Helix 83	AJ2	D	688	698	Right-handed alpha
Helix 84	AJ3	D	698	707	Right-handed alpha
Helix 85	AJ4	D	712	722	Right-handed alpha
Helix 86	AJ5	D	732	741	Right-handed alpha
Helix 87	AJ6	D	771	784	Right-handed alpha
Helix 88	AJ7	D	786	796	Right-handed alpha

There are 26 sheets in PDB entry 6MMV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	65	first strand
Strand 2	A	26	32	parallel
Strand 3	A	91	92	parallel
Strand 4	A	119	120	parallel
Strand 5	A	138	139	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	196	first strand
Strand 2	A	163	167	parallel
Strand 3	A	218	221	parallel
Strand 4	A	246	248	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	271	first strand
Strand 2	A	351	356	anti-parallel
Strand 3	A	361	367	anti-parallel
Strand 4	A	372	374	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	476	first strand
Strand 2	A	399	401	parallel
Strand 3	A	512	518	parallel
Strand 4	A	753	761	anti-parallel
Strand 5	A	534	543	anti-parallel
Strand 6	A	728	732	anti-parallel
Strand 7	A	681	682	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	476	first strand
Strand 2	A	399	401	parallel
Strand 3	A	512	518	parallel
Strand 4	A	753	761	anti-parallel
Strand 5	A	534	543	anti-parallel
Strand 6	A	746	748	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	412	first strand
Strand 2	A	450	457	anti-parallel
Strand 3	A	434	439	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	489	first strand
Strand 2	A	496	497	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	73	first strand
Strand 2	B	35	40	parallel
Strand 3	B	97	100	parallel
Strand 4	B	124	126	parallel
Strand 5	B	144	146	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	205	first strand
Strand 2	B	170	174	parallel
Strand 3	B	226	230	parallel
Strand 4	B	254	257	parallel
Strand 5	B	277	280	parallel
Strand 6	B	362	366	anti-parallel
Strand 7	B	372	378	anti-parallel
Strand 8	B	383	384	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	343	first strand
Strand 2	B	346	347	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	474	479	first strand
Strand 2	B	405	410	parallel
Strand 3	B	507	508	parallel
Strand 4	B	764	765	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	420	first strand
Strand 2	B	450	457	anti-parallel
Strand 3	B	434	440	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	529	530	first strand
Strand 2	B	760	761	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	682	683	first strand
Strand 2	B	727	731	parallel
Strand 3	B	533	537	anti-parallel
Strand 4	B	748	749	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	65	first strand
Strand 2	C	27	32	parallel
Strand 3	C	87	92	parallel
Strand 4	C	118	120	parallel
Strand 5	C	137	139	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	196	first strand
Strand 2	C	164	167	parallel
Strand 3	C	218	222	parallel
Strand 4	C	246	248	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	271	first strand
Strand 2	C	351	356	anti-parallel
Strand 3	C	361	367	anti-parallel
Strand 4	C	372	374	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	478	first strand
Strand 2	C	397	402	parallel
Strand 3	C	512	518	parallel
Strand 4	C	753	762	anti-parallel
Strand 5	C	534	543	anti-parallel
Strand 6	C	728	732	anti-parallel
Strand 7	C	681	682	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	528	529	first strand
Strand 2	C	753	762	anti-parallel
Strand 3	C	534	543	anti-parallel
Strand 4	C	746	748	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	412	first strand
Strand 2	C	451	457	anti-parallel
Strand 3	C	434	438	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	487	489	first strand
Strand 2	C	496	498	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	74	first strand
Strand 2	D	35	41	parallel
Strand 3	D	97	102	parallel
Strand 4	D	124	126	parallel
Strand 5	D	144	145	parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	200	204	first strand
Strand 2	D	170	174	parallel
Strand 3	D	226	230	parallel
Strand 4	D	254	257	parallel
Strand 5	D	276	280	parallel
Strand 6	D	362	366	anti-parallel
Strand 7	D	372	378	anti-parallel
Strand 8	D	383	385	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	410	first strand
Strand 2	D	476	479	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	417	420	first strand
Strand 2	D	450	458	anti-parallel
Strand 3	D	434	440	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	728	731	first strand
Strand 2	D	533	537	anti-parallel
Strand 3	D	748	749	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MMV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MMV