Analysis of interatomic Contacts of Structural Units in PDB entry:
6MN1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MN1 entry

There are 2 chains in PDB entry 6MN1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3ALA 262
B
 SER 3THR 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 6MN1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 19Right-handed alpha
Helix 2
AA2
A
32 36Right-handed 310
Helix 3
AA3
A
42 54Right-handed alpha
Helix 4
AA4
A
68 73Right-handed alpha
Helix 5
AA5
A
74 81Right-handed 310
Helix 6
AA6
A
92 95Right-handed 310
Helix 7
AA7
A
96 104Right-handed alpha
Helix 8
AA8
A
124 130Right-handed alpha
Helix 9
AA9
A
142 150Right-handed alpha
Helix 10
AB1
A
160 164Right-handed 310
Helix 11
AB2
A
165 174Right-handed alpha
Helix 12
AB3
A
214 226Right-handed alpha
Helix 13
AB4
A
244 260Right-handed alpha
Helix 14
AB5
B
7 18Right-handed alpha
Helix 15
AB6
B
32 36Right-handed 310
Helix 16
AB7
B
42 54Right-handed alpha
Helix 17
AB8
B
68 73Right-handed alpha
Helix 18
AB9
B
74 81Right-handed 310
Helix 19
AC1
B
92 95Right-handed 310
Helix 20
AC2
B
96 104Right-handed alpha
Helix 21
AC3
B
124 130Right-handed alpha
Helix 22
AC4
B
142 150Right-handed alpha
Helix 23
AC5
B
160 164Right-handed 310
Helix 24
AC6
B
165 174Right-handed alpha
Helix 25
AC7
B
214 227Right-handed alpha
Helix 26
AC8
B
244 260Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 6MN1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
37 38parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 110first strand
Strand 2
A
118 122anti-parallel
Strand 3
A
58 62anti-parallel
Strand 4
A
25 30parallel
Strand 5
A
153 157parallel
Strand 6
A
237 243anti-parallel
Strand 7
A
230 234anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 189first strand
Strand 2
A
194 202anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 110first strand
Strand 2
B
118 122anti-parallel
Strand 3
B
58 62anti-parallel
Strand 4
B
25 30parallel
Strand 5
B
153 157parallel
Strand 6
B
237 243anti-parallel
Strand 7
B
230 234anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 190first strand
Strand 2
B
193 202anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il