Analysis of interatomic Contacts of Structural Units in PDB entry:
6MN8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MN8 entry

There is 1 chain in PDB entry 6MN8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 47THR 461
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6MN8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 73Right-handed alpha
Helix 2
AA2
A
88 109Right-handed alpha
Helix 3
AA3
A
122 126Right-handed alpha
Helix 4
AA4
A
127 128Right-handed 310
Helix 5
AA5
A
135 139Right-handed 310
Helix 6
AA6
A
160 172Right-handed alpha
Helix 7
AA7
A
174 178Right-handed 310
Helix 8
AA8
A
216 238Right-handed alpha
Helix 9
AA9
A
284 291Right-handed alpha
Helix 10
AB1
A
314 325Right-handed alpha
Helix 11
AB2
A
333 337Right-handed 310
Helix 12
AB3
A
353 374Right-handed alpha
Helix 13
AB4
A
387 398Right-handed alpha
Helix 14
AB5
A
407 413Right-handed alpha
Helix 15
AB6
A
433 461Right-handed alpha
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There are 5 sheets in PDB entry 6MN8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 78first strand
Strand 2
A
85 87anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
180 189parallel
Strand 3
A
204 214anti-parallel
Strand 4
A
306 313anti-parallel
Strand 5
A
273 283anti-parallel
Strand 6
A
259 266anti-parallel
Strand 7
A
243 247anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 121first strand
Strand 2
A
148 156anti-parallel
Strand 3
A
141 145anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
302 304anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 380first strand
Strand 2
A
341 345parallel
Strand 3
A
402 406parallel
Strand 4
A
415 420anti-parallel
Strand 5
A
426 430anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il