Analysis of interatomic Contacts of Structural Units in PDB entry:
6MNI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MNI entry

There are 2 chains in PDB entry 6MNI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 29ALA 286
B
 THR 35MET 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6MNI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 70Right-handed alpha
Helix 2
AA2
A
70 75Right-handed alpha
Helix 3
AA3
A
92 109Right-handed alpha
Helix 4
AA4
A
137 140Right-handed 310
Helix 5
AA5
A
141 150Right-handed alpha
Helix 6
AA6
A
163 166Right-handed 310
Helix 7
AA7
A
193 201Right-handed alpha
Helix 8
AA8
A
226 230Right-handed 310
Helix 9
AA9
A
233 237Right-handed 310
Helix 10
AB1
A
240 245Right-handed alpha
Helix 11
AB2
A
281 285Right-handed alpha
Helix 12
AB3
B
36 69Right-handed alpha
Helix 13
AB4
B
70 75Right-handed alpha
Helix 14
AB5
B
92 109Right-handed alpha
Helix 15
AB6
B
137 140Right-handed 310
Helix 16
AB7
B
141 149Right-handed alpha
Helix 17
AB8
B
163 166Right-handed 310
Helix 18
AB9
B
193 202Right-handed alpha
Helix 19
AC1
B
226 230Right-handed 310
Helix 20
AC2
B
233 237Right-handed 310
Helix 21
AC3
B
240 245Right-handed alpha
Helix 22
AC4
B
281 285Right-handed alpha
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There are 6 sheets in PDB entry 6MNI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 127first strand
Strand 2
A
114 119anti-parallel
Strand 3
A
181 192anti-parallel
Strand 4
A
167 178anti-parallel
Strand 5
A
154 156anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 127first strand
Strand 2
A
114 119anti-parallel
Strand 3
A
181 192anti-parallel
Strand 4
A
167 178anti-parallel
Strand 5
A
160 162anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 222first strand
Strand 2
A
210 215anti-parallel
Strand 3
A
273 280anti-parallel
Strand 4
A
259 268anti-parallel
Strand 5
A
250 256anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 127first strand
Strand 2
B
114 119anti-parallel
Strand 3
B
185 192anti-parallel
Strand 4
B
167 176anti-parallel
Strand 5
B
154 156anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 127first strand
Strand 2
B
114 119anti-parallel
Strand 3
B
185 192anti-parallel
Strand 4
B
167 176anti-parallel
Strand 5
B
160 162anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 222first strand
Strand 2
B
210 215anti-parallel
Strand 3
B
273 280anti-parallel
Strand 4
B
259 267anti-parallel
Strand 5
B
250 256anti-parallel
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