Analysis of interatomic Contacts of Structural Units in PDB entry:
6MNM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MNM entry

There are 4 chains in PDB entry 6MNM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ALA -1TRP 178
D
 ARG -26ALA 191
A
 GLN 2PRO 202
B
 ALA 1ALA 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6MNM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
45 51Right-handed alpha
Helix 2
AA2
C
55 77Right-handed alpha
Helix 3
AA3
D
53 64Right-handed alpha
Helix 4
AA4
D
64 78Right-handed alpha
Helix 5
AA5
D
78 85Right-handed alpha
Helix 6
AA6
D
90 94Right-handed 310
Helix 7
AA7
A
80 84Right-handed 310
Helix 8
AA8
A
93 97Right-handed 310
Helix 9
AA9
A
189 193Right-handed 310
Helix 10
AB1
B
80 84Right-handed 310
Helix 11
AB2
B
112 116Right-handed 310
Helix 12
AB3
B
127 135Right-handed alpha
Helix 13
AB4
B
194 198Right-handed alpha
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There are 18 sheets in PDB entry 6MNM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
40 43first strand
Strand 2
C
29 35anti-parallel
Strand 3
C
19 26anti-parallel
Strand 4
C
4 15anti-parallel
Strand 5
D
7 18anti-parallel
Strand 6
D
23 32anti-parallel
Strand 7
D
35 41anti-parallel
Strand 8
D
47 49anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 53first strand
Strand 2
D
-25 -24parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
88 93first strand
Strand 2
C
103 112anti-parallel
Strand 3
C
145 149anti-parallel
Strand 4
C
138 139anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
88 93first strand
Strand 2
C
103 112anti-parallel
Strand 3
C
152 153anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
127 128first strand
Strand 2
C
118 122anti-parallel
Strand 3
C
162 166anti-parallel
Strand 4
C
174 177anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
99 104first strand
Strand 2
D
115 123anti-parallel
Strand 3
D
156 163anti-parallel
Strand 4
D
143 145anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
99 104first strand
Strand 2
D
115 123anti-parallel
Strand 3
D
156 163anti-parallel
Strand 4
D
149 150anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
138 139first strand
Strand 2
D
129 134anti-parallel
Strand 3
D
171 177anti-parallel
Strand 4
D
185 190anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
18 24anti-parallel
Strand 3
A
71 76anti-parallel
Strand 4
A
61 66anti-parallel
Strand 5
A
55 58anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
107 112parallel
Strand 3
A
85 91anti-parallel
Strand 4
A
31 37anti-parallel
Strand 5
A
44 50anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
107 112parallel
Strand 3
A
85 91anti-parallel
Strand 4
A
102 103anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 125first strand
Strand 2
A
135 139anti-parallel
Strand 3
A
171 178anti-parallel
Strand 4
A
156 157anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 125first strand
Strand 2
A
135 139anti-parallel
Strand 3
A
171 178anti-parallel
Strand 4
A
162 164anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
17 23anti-parallel
Strand 3
B
73 76anti-parallel
Strand 4
B
62 65anti-parallel
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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 12first strand
Strand 2
B
105 110parallel
Strand 3
B
85 92anti-parallel
Strand 4
B
29 36anti-parallel
Strand 5
B
40 47anti-parallel
Strand 6
B
54 55anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 124first strand
Strand 2
B
136 146anti-parallel
Strand 3
B
184 193anti-parallel
Strand 4
B
166 168anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 124first strand
Strand 2
B
136 146anti-parallel
Strand 3
B
184 193anti-parallel
Strand 4
B
173 174anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 162first strand
Strand 2
B
151 157anti-parallel
Strand 3
B
203 210anti-parallel
Strand 4
B
229 236anti-parallel
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