Analysis of interatomic Contacts of Structural Units in PDB entry:
6MNO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MNO entry

There are 4 chains in PDB entry 6MNO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ILE 0	TRP 178
D	ARG -26	ALA 191
A	GLN 2	PRO 203
B	ALA 1	ALA 239

There are 13 helices in PDB entry 6MNO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	55	77	Right-handed alpha
Helix 2	AA2	D	51	53	Right-handed 310
Helix 3	AA3	D	54	64	Right-handed alpha
Helix 4	AA4	D	64	78	Right-handed alpha
Helix 5	AA5	D	78	84	Right-handed alpha
Helix 6	AA6	D	85	90	Right-handed alpha
Helix 7	AA7	D	91	94	Right-handed 310
Helix 8	AA8	A	81	85	Right-handed 310
Helix 9	AA9	A	94	98	Right-handed 310
Helix 10	AB1	B	80	84	Right-handed 310
Helix 11	AB2	B	112	116	Right-handed 310
Helix 12	AB3	B	127	135	Right-handed alpha
Helix 13	AB4	B	194	198	Right-handed alpha

There are 18 sheets in PDB entry 6MNO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	43	first strand
Strand 2	C	29	35	anti-parallel
Strand 3	C	19	26	anti-parallel
Strand 4	C	4	15	anti-parallel
Strand 5	D	7	18	anti-parallel
Strand 6	D	23	32	anti-parallel
Strand 7	D	35	41	anti-parallel
Strand 8	D	47	49	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	93	first strand
Strand 2	C	103	112	anti-parallel
Strand 3	C	145	153	anti-parallel
Strand 4	C	131	134	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	93	first strand
Strand 2	C	103	112	anti-parallel
Strand 3	C	145	153	anti-parallel
Strand 4	C	138	139	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	120	first strand
Strand 2	C	162	166	anti-parallel
Strand 3	C	174	177	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	104	first strand
Strand 2	D	115	123	anti-parallel
Strand 3	D	156	163	anti-parallel
Strand 4	D	143	145	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	104	first strand
Strand 2	D	115	123	anti-parallel
Strand 3	D	156	163	anti-parallel
Strand 4	D	149	150	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	134	first strand
Strand 2	D	171	177	anti-parallel
Strand 3	D	185	190	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	19	25	anti-parallel
Strand 3	A	72	77	anti-parallel
Strand 4	A	62	67	anti-parallel
Strand 5	A	56	59	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	14	first strand
Strand 2	A	108	113	parallel
Strand 3	A	86	92	anti-parallel
Strand 4	A	32	38	anti-parallel
Strand 5	A	45	51	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	14	first strand
Strand 2	A	108	113	parallel
Strand 3	A	86	92	anti-parallel
Strand 4	A	103	104	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	125	first strand
Strand 2	A	135	140	anti-parallel
Strand 3	A	176	180	anti-parallel
Strand 4	A	156	159	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	164	first strand
Strand 2	B	166	168	anti-parallel
Strand 3	B	184	193	anti-parallel
Strand 4	B	136	146	anti-parallel
Strand 5	B	120	124	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	164	first strand
Strand 2	B	166	168	anti-parallel
Strand 3	B	184	193	anti-parallel
Strand 4	B	173	174	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	20	23	anti-parallel
Strand 3	B	71	76	anti-parallel
Strand 4	B	17	18	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	20	23	anti-parallel
Strand 3	B	71	76	anti-parallel
Strand 4	B	62	65	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	12	first strand
Strand 2	B	105	110	parallel
Strand 3	B	85	92	anti-parallel
Strand 4	B	29	36	anti-parallel
Strand 5	B	40	47	anti-parallel
Strand 6	B	54	55	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	12	first strand
Strand 2	B	105	110	parallel
Strand 3	B	85	92	anti-parallel
Strand 4	B	100	101	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	162	first strand
Strand 2	B	151	157	anti-parallel
Strand 3	B	203	210	anti-parallel
Strand 4	B	229	236	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MNO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MNO