Analysis of interatomic Contacts of Structural Units in PDB entry:
6MOK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MOK entry

There are 2 chains in PDB entry 6MOK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1GLU 289
B
 PRO 9ASP 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 6MOK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 15Right-handed alpha
Helix 2
AA2
A
16 26Right-handed alpha
Helix 3
AA3
A
39 48Right-handed alpha
Helix 4
AA4
A
49 58Right-handed alpha
Helix 5
AA5
A
72 81Right-handed alpha
Helix 6
AA6
A
82 92Right-handed alpha
Helix 7
AA7
A
105 114Right-handed alpha
Helix 8
AA8
A
115 125Right-handed alpha
Helix 9
AA9
A
134 143Right-handed alpha
Helix 10
AB1
A
144 154Right-handed alpha
Helix 11
AB2
A
167 176Right-handed alpha
Helix 12
AB3
A
177 187Right-handed alpha
Helix 13
AB4
A
200 209Right-handed alpha
Helix 14
AB5
A
210 220Right-handed alpha
Helix 15
AB6
A
233 241Right-handed alpha
Helix 16
AB7
A
243 253Right-handed alpha
Helix 17
AB8
A
266 275Right-handed alpha
Helix 18
AB9
A
276 289Right-handed alpha
Helix 19
AC1
B
10 22Right-handed alpha
Helix 20
AC2
B
86 90Right-handed 310
Helix 21
AC3
B
116 118Right-handed 310
Helix 22
AC4
B
150 152Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 6MOK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 29first strand
Strand 2
B
37 42anti-parallel
Strand 3
B
78 84anti-parallel
Strand 4
B
70 74anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 67first strand
Strand 2
B
53 59anti-parallel
Strand 3
B
95 102anti-parallel
Strand 4
B
107 114anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 131first strand
Strand 2
B
138 143anti-parallel
Strand 3
B
180 183anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 174first strand
Strand 2
B
154 162anti-parallel
Strand 3
B
191 200anti-parallel
Strand 4
B
216 219anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il