Analysis of interatomic Contacts of Structural Units in PDB entry:
6MP5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MP5 entry

There are 8 chains in PDB entry 6MP5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 41	SER 378
A	PRO 380	HIS 453
B	MET 41	SER 378
B	PRO 380	HIS 453
C	MET 41	SER 378
C	PRO 380	HIS 453
D	MET 41	SER 378
D	PRO 380	HIS 453

There are 65 helices in PDB entry 6MP5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	52	66	Right-handed alpha
Helix 2	AA2	A	67	69	Right-handed 310
Helix 3	AA3	A	85	91	Right-handed alpha
Helix 4	AA4	A	96	98	Right-handed 310
Helix 5	AA5	A	103	107	Right-handed alpha
Helix 6	AA6	A	151	154	Right-handed 310
Helix 7	AA7	A	158	163	Right-handed 310
Helix 8	AA8	A	174	184	Right-handed alpha
Helix 9	AA9	A	203	219	Right-handed alpha
Helix 10	AB1	A	221	223	Right-handed 310
Helix 11	AB2	A	239	253	Right-handed alpha
Helix 12	AB3	A	301	307	Right-handed alpha
Helix 13	AB4	A	335	338	Right-handed 310
Helix 14	AB5	A	345	365	Right-handed alpha
Helix 15	AB6	A	411	429	Right-handed alpha
Helix 16	AB7	A	430	433	Right-handed 310
Helix 17	AB8	A	438	453	Right-handed alpha
Helix 18	AB9	B	52	66	Right-handed alpha
Helix 19	AC1	B	67	69	Right-handed 310
Helix 20	AC2	B	85	91	Right-handed alpha
Helix 21	AC3	B	95	98	Right-handed 310
Helix 22	AC4	B	104	106	Right-handed 310
Helix 23	AC5	B	158	163	Right-handed 310
Helix 24	AC6	B	174	184	Right-handed alpha
Helix 25	AC7	B	203	219	Right-handed alpha
Helix 26	AC8	B	221	223	Right-handed 310
Helix 27	AC9	B	239	253	Right-handed alpha
Helix 28	AD1	B	301	305	Right-handed 310
Helix 29	AD2	B	345	365	Right-handed alpha
Helix 30	AD3	B	411	429	Right-handed alpha
Helix 31	AD4	B	430	433	Right-handed 310
Helix 32	AD5	B	438	453	Right-handed alpha
Helix 33	AD6	C	52	66	Right-handed alpha
Helix 34	AD7	C	67	69	Right-handed 310
Helix 35	AD8	C	85	91	Right-handed alpha
Helix 36	AD9	C	95	98	Right-handed 310
Helix 37	AE1	C	104	106	Right-handed 310
Helix 38	AE2	C	151	154	Right-handed 310
Helix 39	AE3	C	158	163	Right-handed 310
Helix 40	AE4	C	171	184	Right-handed alpha
Helix 41	AE5	C	203	220	Right-handed alpha
Helix 42	AE6	C	239	253	Right-handed alpha
Helix 43	AE7	C	301	305	Right-handed 310
Helix 44	AE8	C	335	338	Right-handed 310
Helix 45	AE9	C	345	365	Right-handed alpha
Helix 46	AF1	C	411	421	Right-handed alpha
Helix 47	AF2	C	421	429	Right-handed alpha
Helix 48	AF3	C	438	452	Right-handed alpha
Helix 49	AF4	D	52	66	Right-handed alpha
Helix 50	AF5	D	67	69	Right-handed 310
Helix 51	AF6	D	85	91	Right-handed alpha
Helix 52	AF7	D	95	98	Right-handed 310
Helix 53	AF8	D	104	107	Right-handed 310
Helix 54	AF9	D	123	125	Right-handed 310
Helix 55	AG1	D	151	154	Right-handed 310
Helix 56	AG2	D	158	163	Right-handed 310
Helix 57	AG3	D	174	184	Right-handed alpha
Helix 58	AG4	D	203	219	Right-handed alpha
Helix 59	AG5	D	239	253	Right-handed alpha
Helix 60	AG6	D	268	270	Right-handed 310
Helix 61	AG7	D	301	305	Right-handed 310
Helix 62	AG8	D	345	365	Right-handed alpha
Helix 63	AG9	D	411	429	Right-handed alpha
Helix 64	AH1	D	430	433	Right-handed 310
Helix 65	AH2	D	438	452	Right-handed alpha

There are 27 sheets in PDB entry 6MP5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	114	first strand
Strand 2	A	71	74	parallel
Strand 3	A	42	49	parallel
Strand 4	A	134	143	parallel
Strand 5	A	127	130	anti-parallel
Strand 6	A	118	122	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	114	first strand
Strand 2	A	71	74	parallel
Strand 3	A	42	49	parallel
Strand 4	A	134	143	parallel
Strand 5	A	331	333	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	81	first strand
Strand 2	A	100	102	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	149	first strand
Strand 2	A	298	299	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	167	first strand
Strand 2	A	291	293	parallel
Strand 3	A	188	194	parallel
Strand 4	A	225	231	parallel
Strand 5	A	256	258	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	267	first strand
Strand 2	A	272	277	anti-parallel
Strand 3	A	284	288	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	384	first strand
Strand 2	A	387	393	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	114	first strand
Strand 2	B	71	74	parallel
Strand 3	B	42	49	parallel
Strand 4	B	135	143	parallel
Strand 5	B	127	130	anti-parallel
Strand 6	B	118	121	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	114	first strand
Strand 2	B	71	74	parallel
Strand 3	B	42	49	parallel
Strand 4	B	135	143	parallel
Strand 5	B	331	333	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	81	first strand
Strand 2	B	100	102	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	149	first strand
Strand 2	B	298	299	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	167	first strand
Strand 2	B	291	293	parallel
Strand 3	B	188	194	parallel
Strand 4	B	225	231	parallel
Strand 5	B	256	259	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	267	first strand
Strand 2	B	272	277	anti-parallel
Strand 3	B	284	288	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	384	first strand
Strand 2	B	387	393	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	114	first strand
Strand 2	C	71	74	parallel
Strand 3	C	42	49	parallel
Strand 4	C	135	143	parallel
Strand 5	C	127	130	anti-parallel
Strand 6	C	118	122	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	114	first strand
Strand 2	C	71	74	parallel
Strand 3	C	42	49	parallel
Strand 4	C	135	143	parallel
Strand 5	C	331	333	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	81	first strand
Strand 2	C	100	102	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	149	first strand
Strand 2	C	298	299	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	167	first strand
Strand 2	C	291	293	parallel
Strand 3	C	188	194	parallel
Strand 4	C	225	231	parallel
Strand 5	C	256	259	parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	261	267	first strand
Strand 2	C	272	277	anti-parallel
Strand 3	C	284	288	anti-parallel
Strand 4	D	283	288	parallel
Strand 5	D	272	277	anti-parallel
Strand 6	D	261	267	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	377	384	first strand
Strand 2	C	387	393	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	114	first strand
Strand 2	D	71	74	parallel
Strand 3	D	43	49	parallel
Strand 4	D	134	143	parallel
Strand 5	D	127	130	anti-parallel
Strand 6	D	118	122	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	114	first strand
Strand 2	D	71	74	parallel
Strand 3	D	43	49	parallel
Strand 4	D	134	143	parallel
Strand 5	D	331	333	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	81	first strand
Strand 2	D	100	102	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	149	first strand
Strand 2	D	298	299	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	167	first strand
Strand 2	D	291	293	parallel
Strand 3	D	188	194	parallel
Strand 4	D	225	231	parallel
Strand 5	D	256	259	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	377	384	first strand
Strand 2	D	387	393	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MP5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MP5