Analysis of interatomic Contacts of Structural Units in PDB entry:
6MPC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MPC entry

There are 2 chains in PDB entry 6MPC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1TYR 416
B
 HIS 0ASN 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 6MPC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 19Right-handed 310
Helix 2
AA2
A
21 35Right-handed alpha
Helix 3
AA3
A
45 50Right-handed alpha
Helix 4
AA4
A
57 74Right-handed alpha
Helix 5
AA5
A
94 102Right-handed 310
Helix 6
AA6
A
108 127Right-handed alpha
Helix 7
AA7
A
140 145Right-handed 310
Helix 8
AA8
A
156 179Right-handed alpha
Helix 9
AA9
A
188 193Right-handed alpha
Helix 10
AB1
A
199 206Right-handed alpha
Helix 11
AB2
A
219 225Right-handed alpha
Helix 12
AB3
A
228 233Right-handed alpha
Helix 13
AB4
A
233 245Right-handed alpha
Helix 14
AB5
A
269 283Right-handed alpha
Helix 15
AB6
A
306 312Right-handed alpha
Helix 16
AB7
A
322 336Right-handed alpha
Helix 17
AB8
A
359 364Right-handed 310
Helix 18
AB9
A
367 379Right-handed alpha
Helix 19
AC1
A
388 392Right-handed alpha
Helix 20
AC2
A
393 401Right-handed alpha
Helix 21
AC3
B
12 19Right-handed 310
Helix 22
AC4
B
21 35Right-handed alpha
Helix 23
AC5
B
45 50Right-handed alpha
Helix 24
AC6
B
57 74Right-handed alpha
Helix 25
AC7
B
94 102Right-handed 310
Helix 26
AC8
B
108 127Right-handed alpha
Helix 27
AC9
B
140 145Right-handed 310
Helix 28
AD1
B
156 179Right-handed alpha
Helix 29
AD2
B
188 193Right-handed alpha
Helix 30
AD3
B
199 206Right-handed alpha
Helix 31
AD4
B
219 225Right-handed alpha
Helix 32
AD5
B
228 233Right-handed alpha
Helix 33
AD6
B
233 245Right-handed alpha
Helix 34
AD7
B
266 268Right-handed 310
Helix 35
AD8
B
269 283Right-handed alpha
Helix 36
AD9
B
307 312Right-handed alpha
Helix 37
AE1
B
322 335Right-handed alpha
Helix 38
AE2
B
359 364Right-handed 310
Helix 39
AE3
B
367 379Right-handed alpha
Helix 40
AE4
B
388 392Right-handed alpha
Helix 41
AE5
B
393 401Right-handed alpha
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There are 6 sheets in PDB entry 6MPC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 183first strand
Strand 2
A
132 136parallel
Strand 3
A
77 81parallel
Strand 4
A
39 42parallel
Strand 5
A
2 6parallel
Strand 6
A
287 292parallel
Strand 7
A
253 258parallel
Strand 8
A
210 214parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
90 91anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 387first strand
Strand 2
A
345 349parallel
Strand 3
A
404 406parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 183first strand
Strand 2
B
132 136parallel
Strand 3
B
77 81parallel
Strand 4
B
39 42parallel
Strand 5
B
2 6parallel
Strand 6
B
287 292parallel
Strand 7
B
253 258parallel
Strand 8
B
210 214parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 87first strand
Strand 2
B
90 91anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
384 387first strand
Strand 2
B
345 349parallel
Strand 3
B
404 406parallel
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