Analysis of interatomic Contacts of Structural Units in PDB entry:
6MPR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MPR entry

There are 2 chains in PDB entry 6MPR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 10ARG 557
B
 LEU 11PRO 553
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 6MPR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 27Right-handed alpha
Helix 2
AA2
A
28 30Right-handed 310
Helix 3
AA3
A
36 38Right-handed 310
Helix 4
AA4
A
39 48Right-handed alpha
Helix 5
AA5
A
64 72Right-handed alpha
Helix 6
AA6
A
91 100Right-handed alpha
Helix 7
AA7
A
116 124Right-handed alpha
Helix 8
AA8
A
134 142Right-handed alpha
Helix 9
AA9
A
166 170Right-handed 310
Helix 10
AB1
A
172 182Right-handed alpha
Helix 11
AB2
A
197 201Right-handed 310
Helix 12
AB3
A
207 211Right-handed 310
Helix 13
AB4
A
230 234Right-handed 310
Helix 14
AB5
A
235 249Right-handed alpha
Helix 15
AB6
A
249 254Right-handed alpha
Helix 16
AB7
A
263 273Right-handed alpha
Helix 17
AB8
A
275 280Right-handed alpha
Helix 18
AB9
A
295 297Right-handed 310
Helix 19
AC1
A
298 304Right-handed alpha
Helix 20
AC2
A
319 325Right-handed alpha
Helix 21
AC3
A
341 352Right-handed alpha
Helix 22
AC4
A
382 387Right-handed alpha
Helix 23
AC5
A
397 403Right-handed alpha
Helix 24
AC6
A
409 416Right-handed alpha
Helix 25
AC7
A
442 451Right-handed alpha
Helix 26
AC8
A
460 464Right-handed 310
Helix 27
AC9
A
476 479Right-handed 310
Helix 28
AD1
A
481 492Right-handed alpha
Helix 29
AD2
A
496 501Right-handed alpha
Helix 30
AD3
A
503 513Right-handed alpha
Helix 31
AD4
A
518 523Right-handed 310
Helix 32
AD5
A
525 529Right-handed 310
Helix 33
AD6
A
530 534Right-handed 310
Helix 34
AD7
A
538 546Right-handed alpha
Helix 35
AD8
B
13 27Right-handed alpha
Helix 36
AD9
B
28 30Right-handed 310
Helix 37
AE1
B
36 38Right-handed 310
Helix 38
AE2
B
39 48Right-handed alpha
Helix 39
AE3
B
64 72Right-handed alpha
Helix 40
AE4
B
91 100Right-handed alpha
Helix 41
AE5
B
111 113Right-handed 310
Helix 42
AE6
B
114 124Right-handed alpha
Helix 43
AE7
B
134 142Right-handed alpha
Helix 44
AE8
B
166 170Right-handed 310
Helix 45
AE9
B
172 182Right-handed alpha
Helix 46
AF1
B
197 201Right-handed 310
Helix 47
AF2
B
207 211Right-handed 310
Helix 48
AF3
B
230 234Right-handed 310
Helix 49
AF4
B
235 249Right-handed alpha
Helix 50
AF5
B
249 254Right-handed alpha
Helix 51
AF6
B
263 273Right-handed alpha
Helix 52
AF7
B
275 280Right-handed alpha
Helix 53
AF8
B
295 297Right-handed 310
Helix 54
AF9
B
298 304Right-handed alpha
Helix 55
AG1
B
319 325Right-handed alpha
Helix 56
AG2
B
341 352Right-handed alpha
Helix 57
AG3
B
382 387Right-handed alpha
Helix 58
AG4
B
397 403Right-handed alpha
Helix 59
AG5
B
409 416Right-handed alpha
Helix 60
AG6
B
442 451Right-handed alpha
Helix 61
AG7
B
460 464Right-handed 310
Helix 62
AG8
B
476 479Right-handed 310
Helix 63
AG9
B
481 492Right-handed alpha
Helix 64
AH1
B
496 501Right-handed alpha
Helix 65
AH2
B
503 513Right-handed alpha
Helix 66
AH3
B
518 523Right-handed 310
Helix 67
AH4
B
525 529Right-handed 310
Helix 68
AH5
B
530 534Right-handed 310
Helix 69
AH6
B
538 546Right-handed alpha
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There are 8 sheets in PDB entry 6MPR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
213 216parallel
Strand 3
A
186 194parallel
Strand 4
A
150 158parallel
Strand 5
A
53 56parallel
Strand 6
A
82 89parallel
Strand 7
A
103 111parallel
Strand 8
A
128 132parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
213 216parallel
Strand 3
A
186 194parallel
Strand 4
A
150 158parallel
Strand 5
A
164 165anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 311first strand
Strand 2
A
289 291parallel
Strand 3
A
257 260parallel
Strand 4
A
355 358parallel
Strand 5
A
421 425parallel
Strand 6
A
466 469parallel
Strand 7
A
472 474anti-parallel
Strand 8
A
516 517anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 363first strand
Strand 2
A
369 370anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 35first strand
Strand 2
B
213 216parallel
Strand 3
B
186 195parallel
Strand 4
B
150 159parallel
Strand 5
B
53 56parallel
Strand 6
B
82 88parallel
Strand 7
B
103 110parallel
Strand 8
B
128 132parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 35first strand
Strand 2
B
213 216parallel
Strand 3
B
186 195parallel
Strand 4
B
150 159parallel
Strand 5
B
164 165anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
309 311first strand
Strand 2
B
289 291parallel
Strand 3
B
257 260parallel
Strand 4
B
355 358parallel
Strand 5
B
421 425parallel
Strand 6
B
466 469parallel
Strand 7
B
472 474anti-parallel
Strand 8
B
516 517anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
362 363first strand
Strand 2
B
369 370anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il