Analysis of interatomic Contacts of Structural Units in PDB entry:
6MPV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MPV entry

There are 4 chains in PDB entry 6MPV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 31GLU 362
B
 ILE 175LYS 504
C
 UNK 1UNK 16
D
 UNK 20UNK 24
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 6MPV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
176 194Right-handed alpha
Helix 2
AA2
B
201 224Right-handed alpha
Helix 3
AA3
B
224 240Right-handed alpha
Helix 4
AA4
B
299 321Right-handed alpha
Helix 5
AA5
B
321 341Right-handed alpha
Helix 6
AA6
B
354 364Right-handed alpha
Helix 7
AA7
B
364 373Right-handed alpha
Helix 8
AA8
B
375 399Right-handed alpha
Helix 9
AA9
B
405 442Right-handed alpha
Helix 10
AB1
B
443 445Right-handed 310
Helix 11
AB2
B
451 495Right-handed alpha
Helix 12
AB3
B
497 502Right-handed alpha
Helix 13
AB4
C
2 16Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 6MPV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 43first strand
Strand 2
A
350 359anti-parallel
Strand 3
A
339 345anti-parallel
Strand 4
A
328 334anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
79 82anti-parallel
Strand 3
A
87 91anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 148first strand
Strand 2
A
134 138anti-parallel
Strand 3
A
114 119anti-parallel
Strand 4
A
104 109anti-parallel
Strand 5
A
164 166parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 171first strand
Strand 2
A
174 176anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 182first strand
Strand 2
A
196 200anti-parallel
Strand 3
A
210 216anti-parallel
Strand 4
A
265 270parallel
Strand 5
A
255 260anti-parallel
Strand 6
A
237 240anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 286first strand
Strand 2
A
289 295anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 306first strand
Strand 2
A
312 314anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il