Analysis of interatomic Contacts of Structural Units in PDB entry:
6MQ9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MQ9 entry

There are 4 chains in PDB entry 6MQ9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 48	ASN 316
B	GLY 47	GLU 317
C	PHE 48	GLU 317
D	PHE 48	GLU 317

There are 41 helices in PDB entry 6MQ9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	61	72	Right-handed alpha
Helix 2	AA2	A	126	148	Right-handed alpha
Helix 3	AA3	A	149	153	Right-handed 310
Helix 4	AA4	A	173	185	Right-handed alpha
Helix 5	AA5	A	195	199	Right-handed 310
Helix 6	AA6	A	200	218	Right-handed alpha
Helix 7	AA7	A	225	229	Right-handed 310
Helix 8	AA8	A	231	245	Right-handed alpha
Helix 9	AA9	A	282	292	Right-handed alpha
Helix 10	AB1	A	294	305	Right-handed alpha
Helix 11	AB2	A	305	315	Right-handed alpha
Helix 12	AB3	B	61	71	Right-handed alpha
Helix 13	AB4	B	126	145	Right-handed alpha
Helix 14	AB5	B	173	185	Right-handed alpha
Helix 15	AB6	B	195	199	Right-handed 310
Helix 16	AB7	B	200	218	Right-handed alpha
Helix 17	AB8	B	225	229	Right-handed 310
Helix 18	AB9	B	231	244	Right-handed alpha
Helix 19	AC1	B	282	292	Right-handed alpha
Helix 20	AC2	B	294	305	Right-handed alpha
Helix 21	AC3	B	305	317	Right-handed alpha
Helix 22	AC4	C	61	71	Right-handed alpha
Helix 23	AC5	C	126	145	Right-handed alpha
Helix 24	AC6	C	173	185	Right-handed alpha
Helix 25	AC7	C	195	199	Right-handed 310
Helix 26	AC8	C	200	218	Right-handed alpha
Helix 27	AC9	C	225	229	Right-handed 310
Helix 28	AD1	C	231	245	Right-handed alpha
Helix 29	AD2	C	282	292	Right-handed alpha
Helix 30	AD3	C	294	305	Right-handed alpha
Helix 31	AD4	C	305	315	Right-handed alpha
Helix 32	AD5	D	61	72	Right-handed alpha
Helix 33	AD6	D	126	145	Right-handed alpha
Helix 34	AD7	D	173	185	Right-handed alpha
Helix 35	AD8	D	195	199	Right-handed 310
Helix 36	AD9	D	200	218	Right-handed alpha
Helix 37	AE1	D	225	229	Right-handed 310
Helix 38	AE2	D	236	244	Right-handed alpha
Helix 39	AE3	D	282	292	Right-handed alpha
Helix 40	AE4	D	294	305	Right-handed alpha
Helix 41	AE5	D	305	316	Right-handed alpha

There are 8 sheets in PDB entry 6MQ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	101	first strand
Strand 2	A	104	112	anti-parallel
Strand 3	A	49	56	parallel
Strand 4	A	160	165	parallel
Strand 5	A	189	193	parallel
Strand 6	A	247	248	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	258	first strand
Strand 2	A	261	268	anti-parallel
Strand 3	A	271	274	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	101	first strand
Strand 2	B	104	112	anti-parallel
Strand 3	B	48	56	parallel
Strand 4	B	160	165	parallel
Strand 5	B	189	193	parallel
Strand 6	B	247	248	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	258	first strand
Strand 2	B	261	267	anti-parallel
Strand 3	B	272	274	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	101	first strand
Strand 2	C	104	112	anti-parallel
Strand 3	C	49	56	parallel
Strand 4	C	160	165	parallel
Strand 5	C	189	193	parallel
Strand 6	C	247	248	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	258	first strand
Strand 2	C	261	267	anti-parallel
Strand 3	C	272	274	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	101	first strand
Strand 2	D	104	112	anti-parallel
Strand 3	D	49	56	parallel
Strand 4	D	160	165	parallel
Strand 5	D	189	193	parallel
Strand 6	D	247	248	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	258	first strand
Strand 2	D	261	268	anti-parallel
Strand 3	D	271	274	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MQ9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MQ9