Analysis of interatomic Contacts of Structural Units in PDB entry:
6MQH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MQH entry

There are 2 chains in PDB entry 6MQH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 8LEU 300
B
 GLY 8LEU 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 6MQH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 44Right-handed alpha
Helix 2
AA2
A
52 60Right-handed 310
Helix 3
AA3
A
61 77Right-handed alpha
Helix 4
AA4
A
90 104Right-handed alpha
Helix 5
AA5
A
120 135Right-handed alpha
Helix 6
AA6
A
144 149Right-handed alpha
Helix 7
AA7
A
153 161Right-handed alpha
Helix 8
AA8
A
175 186Right-handed alpha
Helix 9
AA9
A
196 198Right-handed 310
Helix 10
AB1
A
199 206Right-handed alpha
Helix 11
AB2
A
214 218Right-handed 310
Helix 12
AB3
A
219 232Right-handed alpha
Helix 13
AB4
A
234 245Right-handed alpha
Helix 14
AB5
A
245 252Right-handed alpha
Helix 15
AB6
A
258 268Right-handed alpha
Helix 16
AB7
A
283 285Right-handed 310
Helix 17
AB8
A
286 297Right-handed alpha
Helix 18
AB9
B
29 44Right-handed alpha
Helix 19
AC1
B
52 60Right-handed 310
Helix 20
AC2
B
61 77Right-handed alpha
Helix 21
AC3
B
90 104Right-handed alpha
Helix 22
AC4
B
120 135Right-handed alpha
Helix 23
AC5
B
144 149Right-handed alpha
Helix 24
AC6
B
153 161Right-handed alpha
Helix 25
AC7
B
175 186Right-handed alpha
Helix 26
AC8
B
196 198Right-handed 310
Helix 27
AC9
B
199 206Right-handed alpha
Helix 28
AD1
B
214 218Right-handed 310
Helix 29
AD2
B
219 232Right-handed alpha
Helix 30
AD3
B
234 245Right-handed alpha
Helix 31
AD4
B
245 252Right-handed alpha
Helix 32
AD5
B
258 268Right-handed alpha
Helix 33
AD6
B
283 285Right-handed 310
Helix 34
AD7
B
286 297Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6MQH. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 16first strand
Strand 2
A
210 213parallel
Strand 3
A
191 194parallel
Strand 4
A
166 171parallel
Strand 5
A
139 143parallel
Strand 6
A
108 112parallel
Strand 7
A
82 85parallel
Strand 8
A
48 50parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 16first strand
Strand 2
B
210 213parallel
Strand 3
B
191 194parallel
Strand 4
B
166 171parallel
Strand 5
B
139 143parallel
Strand 6
B
108 112parallel
Strand 7
B
82 85parallel
Strand 8
B
48 50parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il