Analysis of interatomic Contacts of Structural Units in PDB entry:
6MRL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MRL entry

There are 3 chains in PDB entry 6MRL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 92	VAL 386
B	GLY 92	VAL 386
D	ASN 61	VAL 386

There are 5 helices in PDB entry 6MRL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	138	143	Right-handed alpha
Helix 2	AA2	B	138	143	Right-handed alpha
Helix 3	AA3	B	186	190	Right-handed 310
Helix 4	AA4	D	138	143	Right-handed alpha
Helix 5	AA5	D	184	190	Right-handed alpha

There are 18 sheets in PDB entry 6MRL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	106	first strand
Strand 2	A	244	256	anti-parallel
Strand 3	A	150	158	anti-parallel
Strand 4	A	203	206	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	114	first strand
Strand 2	A	230	237	anti-parallel
Strand 3	A	126	127	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	114	first strand
Strand 2	A	230	237	anti-parallel
Strand 3	A	168	174	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	148	first strand
Strand 2	A	214	215	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	280	first strand
Strand 2	A	267	271	anti-parallel
Strand 3	A	368	376	anti-parallel
Strand 4	A	305	315	anti-parallel
Strand 5	A	344	351	anti-parallel
Strand 6	A	329	330	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	280	first strand
Strand 2	A	267	271	anti-parallel
Strand 3	A	368	376	anti-parallel
Strand 4	A	305	315	anti-parallel
Strand 5	A	344	351	anti-parallel
Strand 6	A	336	337	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	B	244	253	anti-parallel
Strand 3	B	101	106	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	B	244	253	anti-parallel
Strand 3	B	153	159	anti-parallel
Strand 4	B	203	207	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	114	first strand
Strand 2	B	230	236	anti-parallel
Strand 3	B	126	127	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	114	first strand
Strand 2	B	230	236	anti-parallel
Strand 3	B	169	174	anti-parallel
Strand 4	B	194	197	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	148	first strand
Strand 2	B	214	215	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	272	first strand
Strand 2	B	368	377	anti-parallel
Strand 3	B	305	315	anti-parallel
Strand 4	B	343	351	anti-parallel
Strand 5	B	329	330	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	272	first strand
Strand 2	B	368	377	anti-parallel
Strand 3	B	305	315	anti-parallel
Strand 4	B	343	351	anti-parallel
Strand 5	B	336	338	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	90	first strand
Strand 2	D	93	106	anti-parallel
Strand 3	D	244	259	anti-parallel
Strand 4	D	145	159	anti-parallel
Strand 5	D	203	206	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	114	first strand
Strand 2	D	231	236	anti-parallel
Strand 3	D	169	174	anti-parallel
Strand 4	D	194	197	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	272	first strand
Strand 2	D	368	377	anti-parallel
Strand 3	D	305	315	anti-parallel
Strand 4	D	343	351	anti-parallel
Strand 5	D	329	330	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	272	first strand
Strand 2	D	368	377	anti-parallel
Strand 3	D	305	315	anti-parallel
Strand 4	D	343	351	anti-parallel
Strand 5	D	336	338	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	289	290	first strand
Strand 2	D	298	299	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MRL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MRL