Analysis of interatomic Contacts of Structural Units in PDB entry:
6MRV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MRV entry

There are 2 chains in PDB entry 6MRV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 22	LYS 543
A	SER 22	LYS 543

There are 19 helices in PDB entry 6MRV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	68	70	Right-handed 310
Helix 2	AA2	B	84	88	Right-handed 310
Helix 3	AA3	B	195	199	Right-handed 310
Helix 4	AA4	B	258	262	Right-handed 310
Helix 5	AA5	B	263	267	Right-handed 310
Helix 6	AA6	B	297	302	Right-handed alpha
Helix 7	AA7	B	332	337	Right-handed alpha
Helix 8	AA8	B	456	460	Right-handed 310
Helix 9	AA9	B	494	496	Right-handed 310
Helix 10	AB1	B	538	542	Right-handed alpha
Helix 11	AB2	A	68	70	Right-handed 310
Helix 12	AB3	A	84	88	Right-handed 310
Helix 13	AB4	A	195	199	Right-handed 310
Helix 14	AB5	A	258	262	Right-handed 310
Helix 15	AB6	A	263	267	Right-handed 310
Helix 16	AB7	A	297	302	Right-handed alpha
Helix 17	AB8	A	332	337	Right-handed alpha
Helix 18	AB9	A	456	460	Right-handed 310
Helix 19	AC1	A	538	542	Right-handed alpha

There are 21 sheets in PDB entry 6MRV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	122	first strand
Strand 2	B	72	79	anti-parallel
Strand 3	B	140	149	anti-parallel
Strand 4	B	42	49	anti-parallel
Strand 5	B	24	29	anti-parallel
Strand 6	B	174	177	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	35	first strand
Strand 2	B	185	192	parallel
Strand 3	B	158	159	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	35	first strand
Strand 2	B	185	192	parallel
Strand 3	B	531	537	anti-parallel
Strand 4	B	519	524	anti-parallel
Strand 5	B	510	516	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	135	first strand
Strand 2	B	55	63	anti-parallel
Strand 3	B	161	168	anti-parallel
Strand 4	B	171	172	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	209	first strand
Strand 2	B	215	222	anti-parallel
Strand 3	B	233	240	anti-parallel
Strand 4	B	251	254	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	331	first strand
Strand 2	B	313	319	anti-parallel
Strand 3	B	283	289	anti-parallel
Strand 4	B	269	276	anti-parallel
Strand 5	B	349	350	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	346	first strand
Strand 2	B	359	366	anti-parallel
Strand 3	B	372	379	anti-parallel
Strand 4	B	387	388	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	353	first strand
Strand 2	B	359	366	anti-parallel
Strand 3	B	372	379	anti-parallel
Strand 4	B	393	394	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	396	405	first strand
Strand 2	B	408	415	anti-parallel
Strand 3	B	422	426	anti-parallel
Strand 4	B	434	435	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	451	455	first strand
Strand 2	B	466	472	anti-parallel
Strand 3	B	481	486	anti-parallel
Strand 4	B	498	502	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	122	first strand
Strand 2	A	72	79	anti-parallel
Strand 3	A	140	149	anti-parallel
Strand 4	A	42	49	anti-parallel
Strand 5	A	24	29	anti-parallel
Strand 6	A	174	177	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	35	first strand
Strand 2	A	185	192	parallel
Strand 3	A	158	159	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	35	first strand
Strand 2	A	185	192	parallel
Strand 3	A	531	537	anti-parallel
Strand 4	A	519	524	anti-parallel
Strand 5	A	510	516	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	135	first strand
Strand 2	A	55	63	anti-parallel
Strand 3	A	161	168	anti-parallel
Strand 4	A	171	172	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	209	first strand
Strand 2	A	215	222	anti-parallel
Strand 3	A	233	240	anti-parallel
Strand 4	A	251	254	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	331	first strand
Strand 2	A	313	319	anti-parallel
Strand 3	A	283	289	anti-parallel
Strand 4	A	269	276	anti-parallel
Strand 5	A	349	350	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	346	first strand
Strand 2	A	359	366	anti-parallel
Strand 3	A	372	379	anti-parallel
Strand 4	A	387	388	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	353	first strand
Strand 2	A	359	366	anti-parallel
Strand 3	A	372	379	anti-parallel
Strand 4	A	393	394	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	396	405	first strand
Strand 2	A	408	415	anti-parallel
Strand 3	A	422	426	anti-parallel
Strand 4	A	434	435	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	419	420	first strand
Strand 2	A	444	445	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	455	first strand
Strand 2	A	466	472	anti-parallel
Strand 3	A	479	486	anti-parallel
Strand 4	A	498	505	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MRV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MRV