Analysis of interatomic Contacts of Structural Units in PDB entry:
6MS1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MS1 entry

There are 4 chains in PDB entry 6MS1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 722ARG 815
B
 ILE 722ARG 815
C
 GLY 192VAL 199
D
 GLY 145VAL 152
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 6MS1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
767 773Right-handed alpha
Helix 2
AA2
A
792 801Right-handed alpha
Helix 3
AA3
B
767 772Right-handed alpha
Helix 4
AA4
B
792 802Right-handed alpha
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There are 2 sheets in PDB entry 6MS1. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
786 787first strand
Strand 2
A
779 783anti-parallel
Strand 3
A
806 814anti-parallel
Strand 4
A
724 732anti-parallel
Strand 5
C
195 198parallel
Strand 6
B
740 744anti-parallel
Strand 7
B
758 763anti-parallel
Strand 8
B
779 783anti-parallel
Strand 9
B
786 787anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
724 732first strand
Strand 2
B
806 814anti-parallel
Strand 3
B
779 783anti-parallel
Strand 4
B
758 763anti-parallel
Strand 5
B
740 744anti-parallel
Strand 6
C
195 198anti-parallel
Strand 7
A
724 732parallel
Strand 8
A
806 814anti-parallel
Strand 9
A
779 783anti-parallel
Strand 10
A
758 763anti-parallel
Strand 11
A
740 744anti-parallel
Strand 12
D
149 152anti-parallel
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