Analysis of interatomic Contacts of Structural Units in PDB entry:
6MS2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MS2 entry

There is 1 chain in PDB entry 6MS2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 5TYR 515
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 6MS2. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
294 296Right-handed 310
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There are 10 sheets in PDB entry 6MS2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
301 303anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
27 32anti-parallel
Strand 3
A
40 46anti-parallel
Strand 4
A
52 59anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
330 332anti-parallel
Strand 3
A
367 370anti-parallel
Strand 4
A
489 495anti-parallel
Strand 5
A
392 400anti-parallel
Strand 6
A
403 411anti-parallel
Strand 7
A
415 423anti-parallel
Strand 8
A
426 434anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 84first strand
Strand 2
A
87 101anti-parallel
Strand 3
A
106 116anti-parallel
Strand 4
A
127 129anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 141first strand
Strand 2
A
147 151anti-parallel
Strand 3
A
155 159anti-parallel
Strand 4
A
172 175anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 191first strand
Strand 2
A
194 201anti-parallel
Strand 3
A
209 215anti-parallel
Strand 4
A
223 224anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 191first strand
Strand 2
A
194 201anti-parallel
Strand 3
A
209 215anti-parallel
Strand 4
A
231 232anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 250first strand
Strand 2
A
256 263anti-parallel
Strand 3
A
276 284anti-parallel
Strand 4
A
290 292anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 318first strand
Strand 2
A
504 513anti-parallel
Strand 3
A
349 352anti-parallel
Strand 4
A
340 341anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 318first strand
Strand 2
A
504 513anti-parallel
Strand 3
A
375 383anti-parallel
Strand 4
A
440 447anti-parallel
Strand 5
A
450 456anti-parallel
Strand 6
A
463 468anti-parallel
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