Analysis of interatomic Contacts of Structural Units in PDB entry:
6MS3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MS3 entry

There are 2 chains in PDB entry 6MS3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 4	TYR 515
B	HIS 5	TYR 515

There are 6 helices in PDB entry 6MS3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	61	65	Right-handed 310
Helix 2	AA2	A	294	296	Right-handed 310
Helix 3	AA3	A	336	338	Right-handed 310
Helix 4	AA4	B	61	65	Right-handed 310
Helix 5	AA5	B	294	296	Right-handed 310
Helix 6	AA6	B	336	338	Right-handed 310

There are 20 sheets in PDB entry 6MS3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	7	first strand
Strand 2	A	302	303	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	24	first strand
Strand 2	A	27	32	anti-parallel
Strand 3	A	40	46	anti-parallel
Strand 4	A	53	59	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	38	first strand
Strand 2	A	330	332	anti-parallel
Strand 3	A	367	370	anti-parallel
Strand 4	A	489	495	anti-parallel
Strand 5	A	392	400	anti-parallel
Strand 6	A	403	411	anti-parallel
Strand 7	A	415	423	anti-parallel
Strand 8	A	426	434	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	84	first strand
Strand 2	A	87	102	anti-parallel
Strand 3	A	105	116	anti-parallel
Strand 4	A	127	129	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	141	first strand
Strand 2	A	147	151	anti-parallel
Strand 3	A	155	159	anti-parallel
Strand 4	A	172	175	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	191	first strand
Strand 2	A	194	201	anti-parallel
Strand 3	A	209	215	anti-parallel
Strand 4	A	223	224	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	191	first strand
Strand 2	A	194	201	anti-parallel
Strand 3	A	209	215	anti-parallel
Strand 4	A	231	232	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	250	first strand
Strand 2	A	256	263	anti-parallel
Strand 3	A	276	284	anti-parallel
Strand 4	A	290	292	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	318	first strand
Strand 2	A	504	514	anti-parallel
Strand 3	A	349	352	anti-parallel
Strand 4	A	340	341	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	318	first strand
Strand 2	A	504	514	anti-parallel
Strand 3	A	375	383	anti-parallel
Strand 4	A	440	447	anti-parallel
Strand 5	A	450	456	anti-parallel
Strand 6	A	463	468	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	7	first strand
Strand 2	B	302	303	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	24	first strand
Strand 2	B	27	32	anti-parallel
Strand 3	B	40	46	anti-parallel
Strand 4	B	53	59	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	38	first strand
Strand 2	B	330	332	anti-parallel
Strand 3	B	367	370	anti-parallel
Strand 4	B	489	496	anti-parallel
Strand 5	B	391	400	anti-parallel
Strand 6	B	403	411	anti-parallel
Strand 7	B	415	423	anti-parallel
Strand 8	B	426	434	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	84	first strand
Strand 2	B	87	102	anti-parallel
Strand 3	B	105	116	anti-parallel
Strand 4	B	127	129	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	141	first strand
Strand 2	B	147	151	anti-parallel
Strand 3	B	155	160	anti-parallel
Strand 4	B	172	175	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	191	first strand
Strand 2	B	194	201	anti-parallel
Strand 3	B	209	215	anti-parallel
Strand 4	B	223	224	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	191	first strand
Strand 2	B	194	201	anti-parallel
Strand 3	B	209	215	anti-parallel
Strand 4	B	231	232	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	250	first strand
Strand 2	B	256	263	anti-parallel
Strand 3	B	276	284	anti-parallel
Strand 4	B	290	292	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	318	first strand
Strand 2	B	504	514	anti-parallel
Strand 3	B	349	352	anti-parallel
Strand 4	B	340	341	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	318	first strand
Strand 2	B	504	514	anti-parallel
Strand 3	B	375	383	anti-parallel
Strand 4	B	440	447	anti-parallel
Strand 5	B	450	456	anti-parallel
Strand 6	B	463	468	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MS3

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MS3