Analysis of interatomic Contacts of Structural Units in PDB entry:
6MS8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MS8 entry

There are 8 chains in PDB entry 6MS8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 6	LYS 217
B	VAL 6	LYS 217
C	VAL 6	LYS 217
D	VAL 6	LYS 217
E	SER 5	LYS 217
F	VAL 6	PHE 216
G	VAL 6	LYS 217
H	VAL 6	LYS 214

There are 56 helices in PDB entry 6MS8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	58	68	Right-handed alpha
Helix 2	AA2	A	71	78	Right-handed alpha
Helix 3	AA3	A	78	88	Right-handed alpha
Helix 4	AA4	A	104	122	Right-handed alpha
Helix 5	AA5	A	126	141	Right-handed alpha
Helix 6	AA6	A	183	196	Right-handed alpha
Helix 7	AA7	A	201	217	Right-handed alpha
Helix 8	AA8	B	58	68	Right-handed alpha
Helix 9	AA9	B	71	77	Right-handed alpha
Helix 10	AB1	B	78	88	Right-handed alpha
Helix 11	AB2	B	104	122	Right-handed alpha
Helix 12	AB3	B	126	141	Right-handed alpha
Helix 13	AB4	B	183	196	Right-handed alpha
Helix 14	AB5	B	201	217	Right-handed alpha
Helix 15	AB6	C	58	68	Right-handed alpha
Helix 16	AB7	C	71	77	Right-handed alpha
Helix 17	AB8	C	79	88	Right-handed alpha
Helix 18	AB9	C	104	122	Right-handed alpha
Helix 19	AC1	C	126	141	Right-handed alpha
Helix 20	AC2	C	184	196	Right-handed alpha
Helix 21	AC3	C	201	217	Right-handed alpha
Helix 22	AC4	D	58	68	Right-handed alpha
Helix 23	AC5	D	71	77	Right-handed alpha
Helix 24	AC6	D	78	88	Right-handed alpha
Helix 25	AC7	D	104	120	Right-handed alpha
Helix 26	AC8	D	126	141	Right-handed alpha
Helix 27	AC9	D	183	196	Right-handed alpha
Helix 28	AD1	D	201	217	Right-handed alpha
Helix 29	AD2	E	58	68	Right-handed alpha
Helix 30	AD3	E	71	78	Right-handed alpha
Helix 31	AD4	E	78	88	Right-handed alpha
Helix 32	AD5	E	104	120	Right-handed alpha
Helix 33	AD6	E	126	141	Right-handed alpha
Helix 34	AD7	E	183	196	Right-handed alpha
Helix 35	AD8	E	201	217	Right-handed alpha
Helix 36	AD9	F	58	68	Right-handed alpha
Helix 37	AE1	F	71	77	Right-handed alpha
Helix 38	AE2	F	78	88	Right-handed alpha
Helix 39	AE3	F	104	122	Right-handed alpha
Helix 40	AE4	F	126	141	Right-handed alpha
Helix 41	AE5	F	183	196	Right-handed alpha
Helix 42	AE6	F	201	216	Right-handed alpha
Helix 43	AE7	G	58	68	Right-handed alpha
Helix 44	AE8	G	71	77	Right-handed alpha
Helix 45	AE9	G	78	88	Right-handed alpha
Helix 46	AF1	G	104	122	Right-handed alpha
Helix 47	AF2	G	126	141	Right-handed alpha
Helix 48	AF3	G	183	196	Right-handed alpha
Helix 49	AF4	G	201	217	Right-handed alpha
Helix 50	AF5	H	58	68	Right-handed alpha
Helix 51	AF6	H	71	77	Right-handed alpha
Helix 52	AF7	H	78	88	Right-handed alpha
Helix 53	AF8	H	104	122	Right-handed alpha
Helix 54	AF9	H	126	141	Right-handed alpha
Helix 55	AG1	H	183	196	Right-handed alpha
Helix 56	AG2	H	201	214	Right-handed alpha

There are 24 sheets in PDB entry 6MS8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	A	14	16	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	20	first strand
Strand 2	A	29	41	anti-parallel
Strand 3	A	44	56	anti-parallel
Strand 4	A	92	98	anti-parallel
Strand 5	A	150	155	anti-parallel
Strand 6	A	163	168	anti-parallel
Strand 7	A	179	181	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	103	first strand
Strand 2	A	144	145	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	14	16	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	41	first strand
Strand 2	B	44	56	anti-parallel
Strand 3	B	92	98	anti-parallel
Strand 4	B	150	155	anti-parallel
Strand 5	B	164	168	anti-parallel
Strand 6	B	179	180	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	103	first strand
Strand 2	B	144	145	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	11	first strand
Strand 2	C	14	16	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	41	first strand
Strand 2	C	44	56	anti-parallel
Strand 3	C	92	98	anti-parallel
Strand 4	C	150	155	anti-parallel
Strand 5	C	163	168	anti-parallel
Strand 6	C	179	181	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	103	first strand
Strand 2	C	144	145	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	11	first strand
Strand 2	D	14	16	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	41	first strand
Strand 2	D	44	56	anti-parallel
Strand 3	D	92	98	anti-parallel
Strand 4	D	150	155	anti-parallel
Strand 5	D	163	168	anti-parallel
Strand 6	D	179	181	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	103	first strand
Strand 2	D	144	145	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	11	first strand
Strand 2	E	14	16	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	20	first strand
Strand 2	E	29	41	anti-parallel
Strand 3	E	44	56	anti-parallel
Strand 4	E	92	98	anti-parallel
Strand 5	E	150	155	anti-parallel
Strand 6	E	163	168	anti-parallel
Strand 7	E	179	181	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	103	first strand
Strand 2	E	144	145	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	11	first strand
Strand 2	F	14	16	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	41	first strand
Strand 2	F	44	56	anti-parallel
Strand 3	F	92	98	anti-parallel
Strand 4	F	150	155	anti-parallel
Strand 5	F	163	168	anti-parallel
Strand 6	F	179	181	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	102	103	first strand
Strand 2	F	144	145	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	11	first strand
Strand 2	G	14	16	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	20	first strand
Strand 2	G	29	41	anti-parallel
Strand 3	G	44	56	anti-parallel
Strand 4	G	92	98	anti-parallel
Strand 5	G	150	156	anti-parallel
Strand 6	G	162	168	anti-parallel
Strand 7	G	179	181	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	102	103	first strand
Strand 2	G	144	145	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	11	first strand
Strand 2	H	14	16	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	20	first strand
Strand 2	H	29	41	anti-parallel
Strand 3	H	44	56	anti-parallel
Strand 4	H	92	98	anti-parallel
Strand 5	H	150	155	anti-parallel
Strand 6	H	163	168	anti-parallel
Strand 7	H	179	181	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	102	103	first strand
Strand 2	H	144	145	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MS8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MS8