Analysis of interatomic Contacts of Structural Units in PDB entry:
6MSM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MSM entry

There are 2 chains in PDB entry 6MSM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 1451
B
 UNK 1UNK 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 6MSM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 16Right-handed alpha
Helix 2
AA2
A
20 30Right-handed alpha
Helix 3
AA3
A
33 37Right-handed 310
Helix 4
AA4
A
45 64Right-handed alpha
Helix 5
AA5
A
68 97Right-handed alpha
Helix 6
AA6
A
97 108Right-handed alpha
Helix 7
AA7
A
115 166Right-handed alpha
Helix 8
AA8
A
176 195Right-handed alpha
Helix 9
AA9
A
196 198Right-handed 310
Helix 10
AB1
A
199 219Right-handed alpha
Helix 11
AB2
A
221 245Right-handed alpha
Helix 12
AB3
A
247 268Right-handed alpha
Helix 13
AB4
A
268 276Right-handed alpha
Helix 14
AB5
A
278 308Right-handed alpha
Helix 15
AB6
A
312 329Right-handed alpha
Helix 16
AB7
A
332 352Right-handed alpha
Helix 17
AB8
A
354 376Right-handed alpha
Helix 18
AB9
A
402 409Right-handed alpha
Helix 19
AC1
A
463 473Right-handed alpha
Helix 20
AC2
A
501 508Right-handed alpha
Helix 21
AC3
A
513 524Right-handed alpha
Helix 22
AC4
A
526 532Right-handed alpha
Helix 23
AC5
A
549 564Right-handed alpha
Helix 24
AC6
A
579 588Right-handed alpha
Helix 25
AC7
A
606 613Right-handed alpha
Helix 26
AC8
A
629 637Right-handed alpha
Helix 27
AC9
A
847 852Right-handed alpha
Helix 28
AD1
A
856 886Right-handed alpha
Helix 29
AD2
A
907 912Right-handed alpha
Helix 30
AD3
A
914 922Right-handed alpha
Helix 31
AD4
A
922 927Right-handed alpha
Helix 32
AD5
A
933 958Right-handed alpha
Helix 33
AD6
A
960 966Right-handed alpha
Helix 34
AD7
A
968 985Right-handed alpha
Helix 35
AD8
A
985 1012Right-handed alpha
Helix 36
AD9
A
1013 1047Right-handed alpha
Helix 37
AE1
A
1048 1061Right-handed alpha
Helix 38
AE2
A
1061 1069Right-handed alpha
Helix 39
AE3
A
1070 1121Right-handed alpha
Helix 40
AE4
A
1128 1168Right-handed alpha
Helix 41
AE5
A
1249 1259Right-handed alpha
Helix 42
AE6
A
1278 1284Right-handed alpha
Helix 43
AE7
A
1299 1305Right-handed alpha
Helix 44
AE8
A
1311 1322Right-handed alpha
Helix 45
AE9
A
1324 1330Right-handed alpha
Helix 46
AF1
A
1347 1362Right-handed alpha
Helix 47
AF2
A
1380 1391Right-handed alpha
Helix 48
AF3
A
1403 1409Right-handed 310
Helix 49
AF4
A
1426 1434Right-handed alpha
Helix 50
AF5
A
1435 1440Right-handed alpha
Helix 51
AF6
A
1442 1450Right-handed alpha
Helix 52
AF7
B
8 17Right-handed alpha
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There are 4 sheets in PDB entry 6MSM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 448first strand
Strand 2
A
392 399anti-parallel
Strand 3
A
479 483anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 491first strand
Strand 2
A
568 572parallel
Strand 3
A
602 603parallel
Strand 4
A
454 457parallel
Strand 5
A
615 620parallel
Strand 6
A
623 628anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1227 1234first strand
Strand 2
A
1210 1217anti-parallel
Strand 3
A
1263 1269anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1288 1289first strand
Strand 2
A
1366 1370parallel
Strand 3
A
1396 1400parallel
Strand 4
A
1239 1244parallel
Strand 5
A
1412 1417parallel
Strand 6
A
1420 1424anti-parallel
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