Analysis of interatomic Contacts of Structural Units in PDB entry:
6MSV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MSV entry

There are 12 chains in PDB entry 6MSV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1088	PRO 1173
B	ILE 1091	PRO 1173
C	SER 1089	PRO 1173
D	GLY 1084	PRO 1173
E	SER 1090	PRO 1173
F	SER 1090	PRO 1173
G	ILE 1091	PRO 1173
H	LEU 1085	PRO 1173
I	SER 1090	PRO 1173
J	ILE 1091	PRO 1173
K	SER 1090	PRO 1173
L	ILE 1091	PRO 1173

There are no helices in PDB entry 6MSV

There are 18 sheets in PDB entry 6MSV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1137	1140	first strand
Strand 2	A	1103	1107	anti-parallel
Strand 3	A	1094	1098	anti-parallel
Strand 4	J	1095	1098	anti-parallel
Strand 5	J	1103	1106	anti-parallel
Strand 6	J	1137	1140	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1166	1171	first strand
Strand 2	A	1148	1157	anti-parallel
Strand 3	A	1113	1121	anti-parallel
Strand 4	A	1129	1133	anti-parallel
Strand 5	E	1129	1133	parallel
Strand 6	E	1113	1121	anti-parallel
Strand 7	E	1148	1157	anti-parallel
Strand 8	E	1166	1171	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1137	1140	first strand
Strand 2	B	1103	1107	anti-parallel
Strand 3	B	1094	1098	anti-parallel
Strand 4	L	1095	1098	anti-parallel
Strand 5	L	1103	1106	anti-parallel
Strand 6	L	1137	1140	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1166	1171	first strand
Strand 2	B	1148	1157	anti-parallel
Strand 3	B	1113	1121	anti-parallel
Strand 4	B	1129	1133	anti-parallel
Strand 5	C	1129	1133	parallel
Strand 6	C	1114	1121	anti-parallel
Strand 7	C	1148	1156	anti-parallel
Strand 8	C	1166	1171	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1137	1140	first strand
Strand 2	C	1103	1107	anti-parallel
Strand 3	C	1094	1098	anti-parallel
Strand 4	I	1094	1098	anti-parallel
Strand 5	I	1103	1107	anti-parallel
Strand 6	I	1137	1140	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1137	1140	first strand
Strand 2	D	1103	1106	anti-parallel
Strand 3	D	1095	1098	anti-parallel
Strand 4	F	1094	1098	anti-parallel
Strand 5	F	1103	1107	anti-parallel
Strand 6	F	1137	1140	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1129	1133	first strand
Strand 2	D	1113	1121	anti-parallel
Strand 3	D	1148	1157	anti-parallel
Strand 4	D	1160	1161	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1129	1133	first strand
Strand 2	D	1113	1121	anti-parallel
Strand 3	D	1148	1157	anti-parallel
Strand 4	D	1166	1171	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1137	1140	first strand
Strand 2	E	1103	1107	anti-parallel
Strand 3	E	1094	1098	anti-parallel
Strand 4	K	1094	1098	anti-parallel
Strand 5	K	1103	1107	anti-parallel
Strand 6	K	1137	1140	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1129	1133	first strand
Strand 2	F	1113	1121	anti-parallel
Strand 3	F	1148	1157	anti-parallel
Strand 4	F	1166	1171	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1137	1140	first strand
Strand 2	G	1103	1107	anti-parallel
Strand 3	G	1094	1098	anti-parallel
Strand 4	H	1095	1098	anti-parallel
Strand 5	H	1103	1106	anti-parallel
Strand 6	H	1137	1140	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1129	1133	first strand
Strand 2	G	1113	1121	anti-parallel
Strand 3	G	1148	1157	anti-parallel
Strand 4	G	1160	1161	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1129	1133	first strand
Strand 2	G	1113	1121	anti-parallel
Strand 3	G	1148	1157	anti-parallel
Strand 4	G	1166	1171	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1129	1133	first strand
Strand 2	H	1113	1121	anti-parallel
Strand 3	H	1148	1157	anti-parallel
Strand 4	H	1166	1171	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1129	1133	first strand
Strand 2	I	1113	1121	anti-parallel
Strand 3	I	1148	1157	anti-parallel
Strand 4	I	1166	1171	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1129	1133	first strand
Strand 2	J	1115	1121	anti-parallel
Strand 3	J	1148	1155	anti-parallel
Strand 4	J	1166	1171	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1129	1133	first strand
Strand 2	K	1113	1121	anti-parallel
Strand 3	K	1148	1157	anti-parallel
Strand 4	K	1166	1171	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1129	1133	first strand
Strand 2	L	1113	1121	anti-parallel
Strand 3	L	1148	1157	anti-parallel
Strand 4	L	1166	1171	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MSV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MSV