Analysis of interatomic Contacts of Structural Units in PDB entry:
6MSW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MSW entry

There are 6 chains in PDB entry 6MSW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3TYR 224
B
 SER 4TYR 224
C
 SER 4ARG 219
D
 SER 4ARG 219
E
 ARG 3ARG 219
F
 SER 4ASN 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 6MSW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 7Right-handed 310
Helix 2
AA2
A
19 34Right-handed alpha
Helix 3
AA3
A
41 43Right-handed 310
Helix 4
AA4
A
44 52Right-handed alpha
Helix 5
AA5
A
72 87Right-handed alpha
Helix 6
AA6
A
96 102Right-handed alpha
Helix 7
AA7
A
104 120Right-handed alpha
Helix 8
AA8
A
130 134Right-handed 310
Helix 9
AA9
A
135 150Right-handed alpha
Helix 10
AB1
A
166 178Right-handed alpha
Helix 11
AB2
A
191 201Right-handed alpha
Helix 12
AB3
A
210 221Right-handed alpha
Helix 13
AB4
B
4 7Right-handed 310
Helix 14
AB5
B
19 34Right-handed alpha
Helix 15
AB6
B
41 43Right-handed 310
Helix 16
AB7
B
44 52Right-handed alpha
Helix 17
AB8
B
72 87Right-handed alpha
Helix 18
AB9
B
96 102Right-handed alpha
Helix 19
AC1
B
104 120Right-handed alpha
Helix 20
AC2
B
130 134Right-handed 310
Helix 21
AC3
B
135 150Right-handed alpha
Helix 22
AC4
B
166 178Right-handed alpha
Helix 23
AC5
B
191 202Right-handed alpha
Helix 24
AC6
B
210 222Right-handed alpha
Helix 25
AC7
C
4 7Right-handed 310
Helix 26
AC8
C
19 34Right-handed alpha
Helix 27
AC9
C
41 43Right-handed 310
Helix 28
AD1
C
44 52Right-handed alpha
Helix 29
AD2
C
72 87Right-handed alpha
Helix 30
AD3
C
96 102Right-handed alpha
Helix 31
AD4
C
104 120Right-handed alpha
Helix 32
AD5
C
130 134Right-handed 310
Helix 33
AD6
C
135 150Right-handed alpha
Helix 34
AD7
C
166 178Right-handed alpha
Helix 35
AD8
C
191 201Right-handed alpha
Helix 36
AD9
C
210 217Right-handed alpha
Helix 37
AE1
D
4 7Right-handed 310
Helix 38
AE2
D
19 34Right-handed alpha
Helix 39
AE3
D
41 43Right-handed 310
Helix 40
AE4
D
44 52Right-handed alpha
Helix 41
AE5
D
72 87Right-handed alpha
Helix 42
AE6
D
96 102Right-handed alpha
Helix 43
AE7
D
104 120Right-handed alpha
Helix 44
AE8
D
130 134Right-handed 310
Helix 45
AE9
D
135 150Right-handed alpha
Helix 46
AF1
D
166 178Right-handed alpha
Helix 47
AF2
D
191 201Right-handed alpha
Helix 48
AF3
D
210 216Right-handed alpha
Helix 49
AF4
E
5 7Right-handed 310
Helix 50
AF5
E
19 34Right-handed alpha
Helix 51
AF6
E
44 52Right-handed alpha
Helix 52
AF7
E
72 86Right-handed alpha
Helix 53
AF8
E
96 102Right-handed alpha
Helix 54
AF9
E
104 120Right-handed alpha
Helix 55
AG1
E
130 134Right-handed 310
Helix 56
AG2
E
135 150Right-handed alpha
Helix 57
AG3
E
166 178Right-handed alpha
Helix 58
AG4
E
191 201Right-handed alpha
Helix 59
AG5
E
210 216Right-handed alpha
Helix 60
AG6
F
4 7Right-handed 310
Helix 61
AG7
F
19 34Right-handed alpha
Helix 62
AG8
F
41 43Right-handed 310
Helix 63
AG9
F
44 52Right-handed alpha
Helix 64
AH1
F
72 87Right-handed alpha
Helix 65
AH2
F
96 102Right-handed alpha
Helix 66
AH3
F
104 120Right-handed alpha
Helix 67
AH4
F
130 134Right-handed 310
Helix 68
AH5
F
135 150Right-handed alpha
Helix 69
AH6
F
166 178Right-handed alpha
Helix 70
AH7
F
191 201Right-handed alpha
Helix 71
AH8
F
211 216Right-handed alpha
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There are 6 sheets in PDB entry 6MSW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
37 40parallel
Strand 3
A
59 64parallel
Strand 4
A
90 94parallel
Strand 5
A
124 128parallel
Strand 6
A
153 155parallel
Strand 7
A
182 186parallel
Strand 8
A
205 208parallel
Strand 9
A
9 12parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 12first strand
Strand 2
B
37 40parallel
Strand 3
B
59 64parallel
Strand 4
B
90 94parallel
Strand 5
B
124 128parallel
Strand 6
B
153 155parallel
Strand 7
B
182 186parallel
Strand 8
B
205 208parallel
Strand 9
B
9 12parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 12first strand
Strand 2
C
37 40parallel
Strand 3
C
59 64parallel
Strand 4
C
90 94parallel
Strand 5
C
124 128parallel
Strand 6
C
153 155parallel
Strand 7
C
182 186parallel
Strand 8
C
205 208parallel
Strand 9
C
9 12parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
9 12first strand
Strand 2
D
37 40parallel
Strand 3
D
59 64parallel
Strand 4
D
90 94parallel
Strand 5
D
124 128parallel
Strand 6
D
153 155parallel
Strand 7
D
182 186parallel
Strand 8
D
205 208parallel
Strand 9
D
9 12parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 13first strand
Strand 2
E
37 40parallel
Strand 3
E
59 64parallel
Strand 4
E
90 94parallel
Strand 5
E
124 128parallel
Strand 6
E
153 155parallel
Strand 7
E
182 186parallel
Strand 8
E
205 208parallel
Strand 9
E
9 13parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
9 12first strand
Strand 2
F
37 40parallel
Strand 3
F
59 64parallel
Strand 4
F
90 94parallel
Strand 5
F
124 128parallel
Strand 6
F
153 155parallel
Strand 7
F
182 186parallel
Strand 8
F
205 208parallel
Strand 9
F
9 12parallel
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