Analysis of interatomic Contacts of Structural Units in PDB entry:
6MUL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MUL entry

There are 2 chains in PDB entry 6MUL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 109	TRP 1027
B	VAL 109	TRP 1027

There are 65 helices in PDB entry 6MUL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	109	122	Right-handed alpha
Helix 2	AA2	A	125	130	Right-handed alpha
Helix 3	AA3	A	133	155	Right-handed alpha
Helix 4	AA4	A	158	167	Right-handed alpha
Helix 5	AA5	A	212	228	Right-handed alpha
Helix 6	AA6	A	235	237	Right-handed 310
Helix 7	AA7	A	255	258	Right-handed 310
Helix 8	AA8	A	259	269	Right-handed alpha
Helix 9	AA9	A	279	289	Right-handed alpha
Helix 10	AB1	A	487	494	Right-handed alpha
Helix 11	AB2	A	512	516	Right-handed 310
Helix 12	AB3	A	524	534	Right-handed alpha
Helix 13	AB4	A	534	542	Right-handed alpha
Helix 14	AB5	A	545	553	Right-handed alpha
Helix 15	AB6	A	557	570	Right-handed alpha
Helix 16	AB7	A	575	583	Right-handed alpha
Helix 17	AB8	A	589	601	Right-handed alpha
Helix 18	AB9	A	604	619	Right-handed alpha
Helix 19	AC1	A	627	638	Right-handed alpha
Helix 20	AC2	A	640	655	Right-handed alpha
Helix 21	AC3	A	657	675	Right-handed alpha
Helix 22	AC4	A	675	706	Right-handed alpha
Helix 23	AC5	A	707	721	Right-handed alpha
Helix 24	AC6	A	721	729	Right-handed alpha
Helix 25	AC7	A	784	804	Right-handed alpha
Helix 26	AC8	A	834	839	Right-handed alpha
Helix 27	AC9	A	851	863	Right-handed alpha
Helix 28	AD1	A	866	890	Right-handed alpha
Helix 29	AD2	A	935	943	Right-handed alpha
Helix 30	AD3	A	949	970	Right-handed alpha
Helix 31	AD4	A	970	981	Right-handed alpha
Helix 32	AD5	A	991	1003	Right-handed alpha
Helix 33	AD6	A	1007	1026	Right-handed alpha
Helix 34	AD7	B	110	122	Right-handed alpha
Helix 35	AD8	B	125	130	Right-handed alpha
Helix 36	AD9	B	133	155	Right-handed alpha
Helix 37	AE1	B	158	167	Right-handed alpha
Helix 38	AE2	B	212	228	Right-handed alpha
Helix 39	AE3	B	235	237	Right-handed 310
Helix 40	AE4	B	255	258	Right-handed 310
Helix 41	AE5	B	259	269	Right-handed alpha
Helix 42	AE6	B	279	289	Right-handed alpha
Helix 43	AE7	B	487	494	Right-handed alpha
Helix 44	AE8	B	512	516	Right-handed 310
Helix 45	AE9	B	524	542	Right-handed alpha
Helix 46	AF1	B	545	553	Right-handed alpha
Helix 47	AF2	B	557	570	Right-handed alpha
Helix 48	AF3	B	575	583	Right-handed alpha
Helix 49	AF4	B	589	601	Right-handed alpha
Helix 50	AF5	B	604	619	Right-handed alpha
Helix 51	AF6	B	627	638	Right-handed alpha
Helix 52	AF7	B	640	655	Right-handed alpha
Helix 53	AF8	B	657	675	Right-handed alpha
Helix 54	AF9	B	677	706	Right-handed alpha
Helix 55	AG1	B	707	721	Right-handed alpha
Helix 56	AG2	B	721	729	Right-handed alpha
Helix 57	AG3	B	784	804	Right-handed alpha
Helix 58	AG4	B	834	839	Right-handed alpha
Helix 59	AG5	B	851	863	Right-handed alpha
Helix 60	AG6	B	866	890	Right-handed alpha
Helix 61	AG7	B	935	943	Right-handed alpha
Helix 62	AG8	B	949	970	Right-handed alpha
Helix 63	AG9	B	970	981	Right-handed alpha
Helix 64	AH1	B	991	1003	Right-handed alpha
Helix 65	AH2	B	1007	1026	Right-handed alpha

There are 16 sheets in PDB entry 6MUL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	208	first strand
Strand 2	A	189	196	anti-parallel
Strand 3	A	273	278	parallel
Strand 4	A	239	243	anti-parallel
Strand 5	A	249	250	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	380	first strand
Strand 2	A	322	330	anti-parallel
Strand 3	A	470	474	anti-parallel
Strand 4	A	436	440	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	353	first strand
Strand 2	A	340	349	anti-parallel
Strand 3	A	363	364	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	353	first strand
Strand 2	A	340	349	anti-parallel
Strand 3	A	389	397	anti-parallel
Strand 4	A	416	424	anti-parallel
Strand 5	A	442	443	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	731	733	first strand
Strand 2	A	736	741	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	743	744	first strand
Strand 2	A	759	765	anti-parallel
Strand 3	A	750	751	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	743	744	first strand
Strand 2	A	759	765	anti-parallel
Strand 3	A	769	780	anti-parallel
Strand 4	A	822	827	anti-parallel
Strand 5	A	815	819	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	831	833	first strand
Strand 2	A	899	902	anti-parallel
Strand 3	A	907	909	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	208	first strand
Strand 2	B	189	196	anti-parallel
Strand 3	B	273	278	parallel
Strand 4	B	239	243	anti-parallel
Strand 5	B	249	250	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	380	first strand
Strand 2	B	322	330	anti-parallel
Strand 3	B	471	474	anti-parallel
Strand 4	B	436	438	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	353	first strand
Strand 2	B	340	349	anti-parallel
Strand 3	B	363	364	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	353	first strand
Strand 2	B	340	349	anti-parallel
Strand 3	B	389	397	anti-parallel
Strand 4	B	416	424	anti-parallel
Strand 5	B	442	443	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	731	733	first strand
Strand 2	B	736	741	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	743	744	first strand
Strand 2	B	759	765	anti-parallel
Strand 3	B	750	751	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	743	744	first strand
Strand 2	B	759	765	anti-parallel
Strand 3	B	769	780	anti-parallel
Strand 4	B	822	827	anti-parallel
Strand 5	B	815	819	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	831	833	first strand
Strand 2	B	899	902	anti-parallel
Strand 3	B	907	909	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MUL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MUL