Analysis of interatomic Contacts of Structural Units in PDB entry:
6MUP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MUP entry

There are 14 chains in PDB entry 6MUP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 38	LEU 139
B	LYS 12	GLY 101
C	ALA 14	LEU 116
D	ARG 33	SER 124
E	GLN 39	LEU 139
F	LYS 12	GLY 101
G	LYS 13	PRO 117
H	ARG 33	SER 124
I	A -73	T 73
J	A -73	T 73
K	THR 518	GLU 537
L	LYS 519	GLU 537
M	MET 1	THR 212
N	MET 1	THR 212

There are 60 helices in PDB entry 6MUP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	55	Right-handed alpha
Helix 2	AA2	A	63	75	Right-handed alpha
Helix 3	AA3	A	89	94	Right-handed alpha
Helix 4	AA4	A	94	114	Right-handed alpha
Helix 5	AA5	A	122	133	Right-handed alpha
Helix 6	AA6	B	30	42	Right-handed alpha
Helix 7	AA7	B	49	63	Right-handed alpha
Helix 8	AA8	B	65	76	Right-handed alpha
Helix 9	AA9	B	82	92	Right-handed alpha
Helix 10	AB1	C	16	22	Right-handed alpha
Helix 11	AB2	C	26	37	Right-handed alpha
Helix 12	AB3	C	46	60	Right-handed alpha
Helix 13	AB4	C	61	73	Right-handed alpha
Helix 14	AB5	C	80	89	Right-handed alpha
Helix 15	AB6	C	90	97	Right-handed alpha
Helix 16	AB7	D	37	49	Right-handed alpha
Helix 17	AB8	D	58	67	Right-handed alpha
Helix 18	AB9	D	68	75	Right-handed alpha
Helix 19	AC1	D	76	84	Right-handed alpha
Helix 20	AC2	D	91	102	Right-handed alpha
Helix 21	AC3	D	105	116	Right-handed alpha
Helix 22	AC4	E	47	55	Right-handed alpha
Helix 23	AC5	E	63	75	Right-handed alpha
Helix 24	AC6	E	98	114	Right-handed alpha
Helix 25	AC7	E	122	133	Right-handed alpha
Helix 26	AC8	F	30	42	Right-handed alpha
Helix 27	AC9	F	50	63	Right-handed alpha
Helix 28	AD1	F	65	76	Right-handed alpha
Helix 29	AD2	F	82	92	Right-handed alpha
Helix 30	AD3	G	16	22	Right-handed alpha
Helix 31	AD4	G	26	37	Right-handed alpha
Helix 32	AD5	G	47	67	Right-handed alpha
Helix 33	AD6	G	67	72	Right-handed alpha
Helix 34	AD7	G	80	88	Right-handed alpha
Helix 35	AD8	G	90	97	Right-handed alpha
Helix 36	AD9	H	37	49	Right-handed alpha
Helix 37	AE1	H	59	74	Right-handed alpha
Helix 38	AE2	H	79	84	Right-handed alpha
Helix 39	AE3	H	91	102	Right-handed alpha
Helix 40	AE4	H	105	123	Right-handed alpha
Helix 41	AE5	M	5	16	Right-handed alpha
Helix 42	AE6	M	17	19	Right-handed 310
Helix 43	AE7	M	20	29	Right-handed alpha
Helix 44	AE8	M	32	37	Right-handed alpha
Helix 45	AE9	M	44	60	Right-handed alpha
Helix 46	AF1	M	62	77	Right-handed alpha
Helix 47	AF2	M	101	106	Right-handed alpha
Helix 48	AF3	M	171	183	Right-handed alpha
Helix 49	AF4	M	201	206	Right-handed alpha
Helix 50	AF5	M	206	211	Right-handed alpha
Helix 51	AF6	N	5	15	Right-handed alpha
Helix 52	AF7	N	16	19	Right-handed 310
Helix 53	AF8	N	20	29	Right-handed alpha
Helix 54	AF9	N	32	37	Right-handed alpha
Helix 55	AG1	N	44	60	Right-handed alpha
Helix 56	AG2	N	62	76	Right-handed alpha
Helix 57	AG3	N	101	107	Right-handed alpha
Helix 58	AG4	N	171	183	Right-handed alpha
Helix 59	AG5	N	201	206	Right-handed alpha
Helix 60	AG6	N	206	211	Right-handed alpha

There are 9 sheets in PDB entry 6MUP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	88	89	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	53	54	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	101	first strand
Strand 2	F	96	97	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	86	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	88	89	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	53	54	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	133	134	first strand
Strand 2	M	151	154	anti-parallel
Strand 3	M	160	164	anti-parallel
Strand 4	M	83	89	anti-parallel
Strand 5	M	187	190	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	133	134	first strand
Strand 2	N	151	154	anti-parallel
Strand 3	N	160	164	anti-parallel
Strand 4	N	83	89	anti-parallel
Strand 5	N	187	190	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MUP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MUP