Analysis of interatomic Contacts of Structural Units in PDB entry:
6MUU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MUU entry

There are 7 chains in PDB entry 6MUU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN -2	ARG 777
B	VAL 35	GLY 183
C	ARG 4	LEU 287
D	MET 1	LEU 287
E	PRO 2	GLU 286
F	MET 1	GLU 397
G	G 1	U 25

There are 82 helices in PDB entry 6MUU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	13	Right-handed alpha
Helix 2	AA2	A	16	23	Right-handed alpha
Helix 3	AA3	A	29	44	Right-handed alpha
Helix 4	AA4	A	49	59	Right-handed alpha
Helix 5	AA5	A	61	66	Right-handed alpha
Helix 6	AA6	A	69	78	Right-handed alpha
Helix 7	AA7	A	79	83	Right-handed 310
Helix 8	AA8	A	86	104	Right-handed alpha
Helix 9	AA9	A	152	168	Right-handed alpha
Helix 10	AB1	A	171	183	Right-handed alpha
Helix 11	AB2	A	197	216	Right-handed alpha
Helix 12	AB3	A	219	224	Right-handed alpha
Helix 13	AB4	A	243	248	Right-handed alpha
Helix 14	AB5	A	255	281	Right-handed alpha
Helix 15	AB6	A	303	325	Right-handed alpha
Helix 16	AB7	A	351	368	Right-handed alpha
Helix 17	AB8	A	413	426	Right-handed alpha
Helix 18	AB9	A	501	507	Right-handed alpha
Helix 19	AC1	A	524	529	Right-handed alpha
Helix 20	AC2	A	530	532	Right-handed 310
Helix 21	AC3	A	534	551	Right-handed alpha
Helix 22	AC4	A	552	558	Right-handed alpha
Helix 23	AC5	A	561	566	Right-handed alpha
Helix 24	AC6	A	596	614	Right-handed alpha
Helix 25	AC7	A	632	645	Right-handed alpha
Helix 26	AC8	A	645	650	Right-handed alpha
Helix 27	AC9	A	674	688	Right-handed alpha
Helix 28	AD1	A	702	719	Right-handed alpha
Helix 29	AD2	A	724	736	Right-handed alpha
Helix 30	AD3	A	742	746	Right-handed 310
Helix 31	AD4	A	749	755	Right-handed alpha
Helix 32	AD5	A	764	775	Right-handed alpha
Helix 33	AD6	B	37	44	Right-handed alpha
Helix 34	AD7	B	49	53	Right-handed alpha
Helix 35	AD8	B	53	63	Right-handed alpha
Helix 36	AD9	B	70	88	Right-handed alpha
Helix 37	AE1	B	92	110	Right-handed alpha
Helix 38	AE2	B	118	128	Right-handed alpha
Helix 39	AE3	B	141	158	Right-handed alpha
Helix 40	AE4	B	160	183	Right-handed alpha
Helix 41	AE5	C	51	69	Right-handed alpha
Helix 42	AE6	C	78	84	Right-handed 310
Helix 43	AE7	C	115	120	Right-handed alpha
Helix 44	AE8	C	124	129	Right-handed alpha
Helix 45	AE9	C	153	159	Right-handed alpha
Helix 46	AF1	C	205	220	Right-handed alpha
Helix 47	AF2	C	247	254	Right-handed alpha
Helix 48	AF3	C	274	280	Right-handed alpha
Helix 49	AF4	C	282	287	Right-handed alpha
Helix 50	AF5	D	51	69	Right-handed alpha
Helix 51	AF6	D	115	120	Right-handed alpha
Helix 52	AF7	D	122	129	Right-handed alpha
Helix 53	AF8	D	149	159	Right-handed alpha
Helix 54	AF9	D	205	221	Right-handed alpha
Helix 55	AG1	D	248	254	Right-handed alpha
Helix 56	AG2	D	267	273	Right-handed alpha
Helix 57	AG3	D	275	280	Right-handed alpha
Helix 58	AG4	D	282	287	Right-handed alpha
Helix 59	AG5	E	20	36	Right-handed alpha
Helix 60	AG6	E	37	50	Right-handed alpha
Helix 61	AG7	E	70	74	Right-handed 310
Helix 62	AG8	E	76	81	Right-handed alpha
Helix 63	AG9	E	88	98	Right-handed alpha
Helix 64	AH1	E	104	112	Right-handed alpha
Helix 65	AH2	E	164	171	Right-handed alpha
Helix 66	AH3	E	171	182	Right-handed alpha
Helix 67	AH4	E	187	191	Right-handed 310
Helix 68	AH5	F	36	46	Right-handed alpha
Helix 69	AH6	F	51	60	Right-handed alpha
Helix 70	AH7	F	69	74	Right-handed alpha
Helix 71	AH8	F	113	133	Right-handed alpha
Helix 72	AH9	F	138	142	Right-handed alpha
Helix 73	AI1	F	160	169	Right-handed alpha
Helix 74	AI2	F	178	183	Right-handed alpha
Helix 75	AI3	F	200	204	Right-handed 310
Helix 76	AI4	F	257	263	Right-handed alpha
Helix 77	AI5	F	269	277	Right-handed alpha
Helix 78	AI6	F	280	305	Right-handed alpha
Helix 79	AI7	F	317	324	Right-handed alpha
Helix 80	AI8	F	340	345	Right-handed alpha
Helix 81	AI9	F	346	349	Right-handed 310
Helix 82	AJ1	F	357	364	Right-handed alpha

There are 28 sheets in PDB entry 6MUU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	120	first strand
Strand 2	A	128	129	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	291	first strand
Strand 2	A	295	301	anti-parallel
Strand 3	A	233	241	anti-parallel
Strand 4	A	330	338	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	346	first strand
Strand 2	A	349	350	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	388	first strand
Strand 2	A	395	397	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	402	403	first strand
Strand 2	A	411	412	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	445	first strand
Strand 2	A	450	454	anti-parallel
Strand 3	A	431	435	anti-parallel
Strand 4	A	464	468	anti-parallel
Strand 5	A	483	485	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	580	584	first strand
Strand 2	A	589	595	anti-parallel
Strand 3	A	515	522	anti-parallel
Strand 4	A	620	627	anti-parallel
Strand 5	A	654	656	parallel
Strand 6	A	672	673	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	689	691	first strand
Strand 2	A	694	695	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	143	first strand
Strand 2	C	191	200	anti-parallel
Strand 3	C	147	148	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	143	first strand
Strand 2	C	191	200	anti-parallel
Strand 3	C	7	17	anti-parallel
Strand 4	C	236	244	anti-parallel
Strand 5	C	260	262	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	88	first strand
Strand 2	C	99	101	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	104	first strand
Strand 2	C	109	110	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	168	first strand
Strand 2	C	181	186	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	143	first strand
Strand 2	D	191	199	anti-parallel
Strand 3	D	147	148	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	143	first strand
Strand 2	D	191	199	anti-parallel
Strand 3	D	7	17	anti-parallel
Strand 4	D	236	247	anti-parallel
Strand 5	D	259	261	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	88	first strand
Strand 2	D	99	101	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	104	first strand
Strand 2	D	109	110	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	171	first strand
Strand 2	D	178	186	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	61	first strand
Strand 2	E	155	162	anti-parallel
Strand 3	E	3	11	anti-parallel
Strand 4	E	195	203	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	68	first strand
Strand 2	E	101	103	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	124	131	first strand
Strand 2	E	144	151	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	252	254	first strand
Strand 2	E	211	214	anti-parallel
Strand 3	E	279	281	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	229	236	first strand
Strand 2	E	239	247	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	261	263	first strand
Strand 2	E	271	273	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	248	251	first strand
Strand 2	F	4	8	anti-parallel
Strand 3	F	394	396	anti-parallel
Strand 4	F	331	333	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	20	first strand
Strand 2	F	100	101	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	209	210	first strand
Strand 2	F	254	255	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	223	226	first strand
Strand 2	F	239	242	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MUU

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MUU