Analysis of interatomic Contacts of Structural Units in PDB entry:
6MV1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MV1 entry

There is 1 chain in PDB entry 6MV1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 166THR 520
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6MV1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
269 271Right-handed 310
Helix 2
AA2
A
359 367Right-handed alpha
Helix 3
AA3
A
383 388Right-handed 310
Helix 4
AA4
A
402 415Right-handed alpha
Helix 5
AA5
A
430 434Right-handed 310
Helix 6
AA6
A
436 446Right-handed alpha
Helix 7
AA7
A
471 479Right-handed alpha
Helix 8
AA8
A
495 509Right-handed alpha
Helix 9
AA9
A
512 514Right-handed 310
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There are 5 sheets in PDB entry 6MV1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 174first strand
Strand 2
A
178 184anti-parallel
Strand 3
A
239 245anti-parallel
Strand 4
A
230 234anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 258first strand
Strand 2
A
213 221anti-parallel
Strand 3
A
264 267anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 258first strand
Strand 2
A
213 221anti-parallel
Strand 3
A
204 210anti-parallel
Strand 4
A
195 199anti-parallel
Strand 5
A
301 302anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 326first strand
Strand 2
A
311 317anti-parallel
Strand 3
A
372 376anti-parallel
Strand 4
A
275 285anti-parallel
Strand 5
A
290 296anti-parallel
Strand 6
A
347 353anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 467first strand
Strand 2
A
450 456parallel
Strand 3
A
421 428parallel
Strand 4
A
392 398parallel
Strand 5
A
488 493parallel
Strand 6
A
516 518parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il