Analysis of interatomic Contacts of Structural Units in PDB entry:
6MVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MVD entry

There are 2 chains in PDB entry 6MVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 21HIS 398
B
 HIS 21LEU 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 6MVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 67Right-handed 310
Helix 2
AA2
A
70 80Right-handed alpha
Helix 3
AA3
A
106 111Right-handed alpha
Helix 4
AA4
A
121 130Right-handed alpha
Helix 5
AA5
A
149 152Right-handed 310
Helix 6
AA6
A
153 172Right-handed alpha
Helix 7
AA7
A
181 193Right-handed alpha
Helix 8
AA8
A
195 202Right-handed alpha
Helix 9
AA9
A
217 226Right-handed alpha
Helix 10
AB1
A
277 285Right-handed alpha
Helix 11
AB2
A
287 298Right-handed alpha
Helix 12
AB3
A
349 354Right-handed alpha
Helix 13
AB4
A
355 360Right-handed 310
Helix 14
AB5
A
376 380Right-handed 310
Helix 15
AB6
A
383 395Right-handed alpha
Helix 16
AB7
B
63 68Right-handed 310
Helix 17
AB8
B
70 80Right-handed alpha
Helix 18
AB9
B
106 111Right-handed alpha
Helix 19
AC1
B
121 130Right-handed alpha
Helix 20
AC2
B
153 172Right-handed alpha
Helix 21
AC3
B
181 194Right-handed alpha
Helix 22
AC4
B
195 202Right-handed alpha
Helix 23
AC5
B
217 226Right-handed alpha
Helix 24
AC6
B
277 285Right-handed alpha
Helix 25
AC7
B
287 299Right-handed alpha
Helix 26
AC8
B
349 354Right-handed alpha
Helix 27
AC9
B
355 360Right-handed 310
Helix 28
AD1
B
378 382Right-handed 310
Helix 29
AD2
B
383 395Right-handed alpha
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There are 9 sheets in PDB entry 6MVD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 141first strand
Strand 2
A
25 28parallel
Strand 3
A
175 180parallel
Strand 4
A
203 209parallel
Strand 5
A
311 317parallel
Strand 6
A
367 373parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 61first strand
Strand 2
A
36 40anti-parallel
Strand 3
A
96 99anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 84first strand
Strand 2
A
89 92anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 274first strand
Strand 2
A
264 267anti-parallel
Strand 3
A
319 326parallel
Strand 4
A
338 344anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 141first strand
Strand 2
B
25 28parallel
Strand 3
B
175 180parallel
Strand 4
B
203 209parallel
Strand 5
B
311 317parallel
Strand 6
B
367 373parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 61first strand
Strand 2
B
36 40anti-parallel
Strand 3
B
96 99anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 84first strand
Strand 2
B
89 91anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 228first strand
Strand 2
B
231 232anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 274first strand
Strand 2
B
264 267anti-parallel
Strand 3
B
319 326parallel
Strand 4
B
338 344anti-parallel
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