Analysis of interatomic Contacts of Structural Units in PDB entry:
6MXD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MXD entry

There are 4 chains in PDB entry 6MXD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 6	LEU 234
B	PRO 6	LEU 234
C	PRO 6	LEU 234
D	PRO 6	LEU 234

There are 18 helices in PDB entry 6MXD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	56	Right-handed alpha
Helix 2	AA2	A	89	104	Right-handed alpha
Helix 3	AA3	A	153	168	Right-handed alpha
Helix 4	AA4	A	224	227	Right-handed 310
Helix 5	AA5	B	36	56	Right-handed alpha
Helix 6	AA6	B	91	103	Right-handed alpha
Helix 7	AA7	B	153	168	Right-handed alpha
Helix 8	AA8	B	181	184	Right-handed 310
Helix 9	AA9	B	224	227	Right-handed 310
Helix 10	AB1	C	36	54	Right-handed alpha
Helix 11	AB2	C	88	103	Right-handed alpha
Helix 12	AB3	C	153	167	Right-handed alpha
Helix 13	AB4	C	181	184	Right-handed 310
Helix 14	AB5	C	224	227	Right-handed 310
Helix 15	AB6	D	36	56	Right-handed alpha
Helix 16	AB7	D	88	103	Right-handed alpha
Helix 17	AB8	D	154	168	Right-handed alpha
Helix 18	AB9	D	224	227	Right-handed 310

There are 14 sheets in PDB entry 6MXD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	27	first strand
Strand 2	A	20	22	anti-parallel
Strand 3	A	12	14	anti-parallel
Strand 4	C	30	35	anti-parallel
Strand 5	C	219	222	anti-parallel
Strand 6	C	202	203	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	35	first strand
Strand 2	A	219	222	anti-parallel
Strand 3	A	202	203	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	61	first strand
Strand 2	A	71	73	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	113	first strand
Strand 2	A	80	86	parallel
Strand 3	A	142	150	parallel
Strand 4	A	171	179	parallel
Strand 5	A	192	196	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	14	first strand
Strand 2	B	20	22	anti-parallel
Strand 3	B	25	27	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	203	first strand
Strand 2	B	219	222	anti-parallel
Strand 3	B	30	35	anti-parallel
Strand 4	D	12	14	anti-parallel
Strand 5	D	20	22	anti-parallel
Strand 6	D	25	27	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	60	first strand
Strand 2	B	72	73	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	113	first strand
Strand 2	B	80	86	parallel
Strand 3	B	142	150	parallel
Strand 4	B	171	179	parallel
Strand 5	B	192	196	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	14	first strand
Strand 2	C	20	22	anti-parallel
Strand 3	C	25	27	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	72	73	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	113	first strand
Strand 2	C	80	86	parallel
Strand 3	C	142	150	parallel
Strand 4	C	171	179	parallel
Strand 5	C	192	196	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	35	first strand
Strand 2	D	219	222	anti-parallel
Strand 3	D	202	203	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	60	first strand
Strand 2	D	72	73	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	113	first strand
Strand 2	D	80	86	parallel
Strand 3	D	142	150	parallel
Strand 4	D	171	179	parallel
Strand 5	D	192	196	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MXD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MXD