Analysis of interatomic Contacts of Structural Units in PDB entry:
6MXX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MXX entry

There are 5 chains in PDB entry 6MXX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 1484	GLY 1603
B	ASN 1484	LEU 1602
C	HIS 1482	LEU 1602
D	ASN 1484	GLY 1603
E	ASN 1484	GLU 1598

There are 12 helices in PDB entry 6MXX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1589	1601	Right-handed alpha
Helix 2	AA2	B	1589	1595	Right-handed alpha
Helix 3	AA3	B	1596	1601	Right-handed alpha
Helix 4	AA4	C	1590	1601	Right-handed alpha
Helix 5	AA5	D	1589	1601	Right-handed alpha
Helix 6	AA6	E	1589	1601	Right-handed alpha
Helix 7	AA7	F	1590	1601	Right-handed alpha
Helix 8	AA8	G	1589	1601	Right-handed alpha
Helix 9	AA9	H	1590	1601	Right-handed alpha
Helix 10	AB1	I	1589	1595	Right-handed alpha
Helix 11	AB2	I	1596	1601	Right-handed alpha
Helix 12	AB3	J	1589	1601	Right-handed alpha

There are 21 sheets in PDB entry 6MXX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1524	1528	first strand
Strand 2	A	1514	1519	anti-parallel
Strand 3	A	1501	1511	anti-parallel
Strand 4	A	1490	1494	anti-parallel
Strand 5	A	1532	1533	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1577	1582	first strand
Strand 2	A	1567	1574	anti-parallel
Strand 3	A	1555	1564	anti-parallel
Strand 4	A	1543	1546	anti-parallel
Strand 5	A	1586	1587	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1524	1528	first strand
Strand 2	B	1514	1519	anti-parallel
Strand 3	B	1502	1509	anti-parallel
Strand 4	B	1490	1493	anti-parallel
Strand 5	B	1532	1533	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1577	1582	first strand
Strand 2	B	1567	1574	anti-parallel
Strand 3	B	1555	1564	anti-parallel
Strand 4	G	1555	1564	anti-parallel
Strand 5	G	1567	1574	anti-parallel
Strand 6	G	1577	1582	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1586	1587	first strand
Strand 2	B	1543	1546	anti-parallel
Strand 3	B	1555	1564	anti-parallel
Strand 4	G	1555	1564	anti-parallel
Strand 5	G	1543	1546	anti-parallel
Strand 6	G	1586	1587	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1524	1528	first strand
Strand 2	C	1514	1519	anti-parallel
Strand 3	C	1500	1511	anti-parallel
Strand 4	C	1490	1494	anti-parallel
Strand 5	C	1532	1533	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1500	1511	first strand
Strand 2	C	1586	1589	anti-parallel
Strand 3	C	1543	1546	anti-parallel
Strand 4	C	1555	1564	anti-parallel
Strand 5	C	1567	1574	anti-parallel
Strand 6	C	1577	1582	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1555	1564	first strand
Strand 2	E	1555	1564	anti-parallel
Strand 3	E	1543	1546	anti-parallel
Strand 4	E	1586	1587	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1555	1564	first strand
Strand 2	E	1567	1574	anti-parallel
Strand 3	E	1577	1582	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1524	1528	first strand
Strand 2	D	1514	1519	anti-parallel
Strand 3	D	1502	1509	anti-parallel
Strand 4	D	1490	1493	anti-parallel
Strand 5	D	1532	1533	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1577	1582	first strand
Strand 2	D	1567	1574	anti-parallel
Strand 3	D	1555	1564	anti-parallel
Strand 4	I	1555	1564	anti-parallel
Strand 5	I	1567	1574	anti-parallel
Strand 6	I	1577	1582	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1586	1587	first strand
Strand 2	D	1543	1546	anti-parallel
Strand 3	D	1555	1564	anti-parallel
Strand 4	I	1555	1564	anti-parallel
Strand 5	I	1543	1546	anti-parallel
Strand 6	I	1586	1587	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1524	1528	first strand
Strand 2	E	1514	1519	anti-parallel
Strand 3	E	1501	1509	anti-parallel
Strand 4	E	1490	1494	anti-parallel
Strand 5	E	1532	1533	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1524	1528	first strand
Strand 2	F	1514	1519	anti-parallel
Strand 3	F	1500	1509	anti-parallel
Strand 4	F	1490	1493	anti-parallel
Strand 5	F	1532	1533	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1524	1528	first strand
Strand 2	F	1514	1519	anti-parallel
Strand 3	F	1500	1509	anti-parallel
Strand 4	F	1586	1589	anti-parallel
Strand 5	F	1543	1546	anti-parallel
Strand 6	F	1555	1564	anti-parallel
Strand 7	F	1567	1574	anti-parallel
Strand 8	F	1577	1582	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1524	1528	first strand
Strand 2	G	1514	1519	anti-parallel
Strand 3	G	1502	1508	anti-parallel
Strand 4	G	1490	1493	anti-parallel
Strand 5	G	1532	1533	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1524	1528	first strand
Strand 2	H	1514	1519	anti-parallel
Strand 3	H	1500	1509	anti-parallel
Strand 4	H	1490	1493	anti-parallel
Strand 5	H	1532	1533	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1524	1528	first strand
Strand 2	H	1514	1519	anti-parallel
Strand 3	H	1500	1509	anti-parallel
Strand 4	H	1586	1589	anti-parallel
Strand 5	H	1543	1546	anti-parallel
Strand 6	H	1555	1564	anti-parallel
Strand 7	H	1567	1574	anti-parallel
Strand 8	H	1577	1582	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1524	1528	first strand
Strand 2	I	1514	1519	anti-parallel
Strand 3	I	1501	1508	anti-parallel
Strand 4	I	1490	1494	anti-parallel
Strand 5	I	1532	1533	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1524	1528	first strand
Strand 2	J	1514	1519	anti-parallel
Strand 3	J	1501	1509	anti-parallel
Strand 4	J	1490	1494	anti-parallel
Strand 5	J	1532	1533	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1577	1582	first strand
Strand 2	J	1567	1574	anti-parallel
Strand 3	J	1555	1564	anti-parallel
Strand 4	J	1543	1546	anti-parallel
Strand 5	J	1586	1587	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MXX

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MXX