Analysis of interatomic Contacts of Structural Units in PDB entry:
6MYD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MYD entry

There are 4 chains in PDB entry 6MYD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 369ARG 523
B
 GLU 377TYR 384
C
 GLN 372PRO 522
D
 GLU 377TYR 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 6MYD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
369 374Right-handed 310
Helix 2
AA2
A
383 393Right-handed alpha
Helix 3
AA3
A
442 446Right-handed 310
Helix 4
AA4
A
477 481Right-handed 310
Helix 5
AA5
A
500 507Right-handed alpha
Helix 6
AA6
C
383 393Right-handed alpha
Helix 7
AA7
C
442 446Right-handed 310
Helix 8
AA8
C
477 481Right-handed 310
Helix 9
AA9
C
500 507Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6MYD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 381first strand
Strand 2
A
514 521anti-parallel
Strand 3
A
453 458anti-parallel
Strand 4
A
467 472anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 405first strand
Strand 2
A
412 419anti-parallel
Strand 3
A
397 400anti-parallel
Strand 4
C
397 400anti-parallel
Strand 5
C
412 419anti-parallel
Strand 6
C
404 405anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
379 382first strand
Strand 2
A
490 499anti-parallel
Strand 3
A
430 437anti-parallel
Strand 4
A
412 419anti-parallel
Strand 5
A
397 400anti-parallel
Strand 6
C
397 400anti-parallel
Strand 7
C
412 419anti-parallel
Strand 8
C
430 438anti-parallel
Strand 9
C
490 499anti-parallel
Strand 10
D
379 382anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
376 381first strand
Strand 2
C
514 521anti-parallel
Strand 3
C
453 458anti-parallel
Strand 4
C
467 472anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il