Analysis of interatomic Contacts of Structural Units in PDB entry:
6MYN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MYN entry

There are 2 chains in PDB entry 6MYN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 334ARG 675
B
 PRO 334ARG 675
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 6MYN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
335 344Right-handed alpha
Helix 2
AA2
A
351 360Right-handed alpha
Helix 3
AA3
A
361 363Right-handed 310
Helix 4
AA4
A
436 439Right-handed 310
Helix 5
AA5
A
440 445Right-handed alpha
Helix 6
AA6
A
478 487Right-handed alpha
Helix 7
AA7
A
490 511Right-handed alpha
Helix 8
AA8
A
519 521Right-handed 310
Helix 9
AA9
A
561 565Right-handed 310
Helix 10
AB1
A
566 572Right-handed alpha
Helix 11
AB2
A
577 594Right-handed alpha
Helix 12
AB3
A
605 613Right-handed alpha
Helix 13
AB4
A
615 620Right-handed 310
Helix 14
AB5
A
625 635Right-handed alpha
Helix 15
AB6
A
645 660Right-handed alpha
Helix 16
AB7
B
335 344Right-handed alpha
Helix 17
AB8
B
351 361Right-handed alpha
Helix 18
AB9
B
436 439Right-handed 310
Helix 19
AC1
B
440 445Right-handed alpha
Helix 20
AC2
B
478 487Right-handed alpha
Helix 21
AC3
B
490 511Right-handed alpha
Helix 22
AC4
B
519 521Right-handed 310
Helix 23
AC5
B
561 565Right-handed 310
Helix 24
AC6
B
566 571Right-handed alpha
Helix 25
AC7
B
577 594Right-handed alpha
Helix 26
AC8
B
605 613Right-handed alpha
Helix 27
AC9
B
615 620Right-handed 310
Helix 28
AD1
B
625 636Right-handed alpha
Helix 29
AD2
B
645 660Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 6MYN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 349first strand
Strand 2
A
379 383parallel
Strand 3
A
457 463anti-parallel
Strand 4
A
466 471anti-parallel
Strand 5
A
427 434anti-parallel
Strand 6
A
416 421anti-parallel
Strand 7
A
401 403anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
513 514first strand
Strand 2
A
541 542anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
523 525first strand
Strand 2
A
532 534anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 349first strand
Strand 2
B
379 383parallel
Strand 3
B
457 463anti-parallel
Strand 4
B
466 471anti-parallel
Strand 5
B
427 434anti-parallel
Strand 6
B
416 421anti-parallel
Strand 7
B
401 403anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
513 514first strand
Strand 2
B
541 542anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
523 525first strand
Strand 2
B
532 534anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
550 551first strand
Strand 2
B
574 575anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il